PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g06530.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 997aa    MW: 112383 Da    PI: 5.1808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g06530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.11e-133580248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Vradi02g06530.1 35 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 80
                     78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1087130248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Vradi02g06530.1  87 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 130
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.0082984IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-183283IPR009057Homeodomain-like
SMARTSM007177.0E-153382IPR001005SANT/Myb domain
PfamPF139214.8E-133797No hitNo description
CDDcd001677.86E-123780No hitNo description
SuperFamilySSF466898.79E-2160133IPR009057Homeodomain-like
CDDcd116591.73E-3082133No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1484131IPR009057Homeodomain-like
PROSITE profilePS5129416.44385134IPR017930Myb domain
SMARTSM007171.7E-1285132IPR001005SANT/Myb domain
PfamPF118315.0E-61433681IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 997 aa     Download sequence    Send to blast
MNVTDSRLHN LSRTYYTQII LSVVEAKMRI MIKGGVWKNT EDEILKAAVM KYGKNQWARI  60
SSLLVRKSAK QCKARWYEWL DPSIKKTEWT REEDEKLLHL AKLMPTQWRT IAPIVGRTPS  120
QCLERYEKLL DAACVKDEXY EPGDDPRKLR PGEIDPNPES KPARPDPVDM DEDEKEMLSE  180
ARARLANTKG KKAKRKAREK QLEEARRLAS LQKKRELKAA GIDIRQRKRK RKGIDYNAEI  240
PFEKRPPPGF FDVADEDRPV EQPKFPTTIE ELEGKRRVDI EAQLRKQDIA KNKIAQRQDA  300
PSAILHANKL NDPETVRKRS KLMLPPPQIS DQELDEIAKL GYASDLAGSQ ELTEGSGATR  360
ALLANYAQTP GQGVTPLRTP QRTPSGKGDA IMMEAENLAR LRESQTPLLG GENPELHPSD  420
FSGVTPKKKD IQTPNPMLTP SATPGGAGLT PRIGMTPTRD GFSFSMTPKG TPLRDELRIN  480
EDMNMHXSTK RELQRQADXR RSLRSGLGSL PQPKNEYQIV MEPVTEDAEE PEEKIEEDMS  540
DRIAREKAEE EARQQALLRK RSKVLQRELP RPPAASLELI RNSLIRSDGD KSSFVPPTSI  600
EQADEMIRKE LLTLLEHDNA KYPLDDKVNK EKKKGVKRSA DLSAVPVIED FEEDEMKDAD  660
KLIKEEVQYL CAAMGHENEP LEEFIEAHRT CLNDLMYFPT RNAYGLSSVA GNMEKLAALQ  720
NEFENVRKKL DDDKEKMVRL EKKVTVITQG YEMRAKKSIW PQIEATFKQM DIAATELECF  780
KALQNQEQLA ASHRINNLWS EVQKQKELEK TLQNRYGSLI EELEKMQNIM NQCRLKAEQQ  840
KEIEANNAHA ETNETKINET DVQDTGSIVP HSAEDGNAQA ITVESSHDGT SDQQVEIMQD  900
KSTSSPSHDM NVDSDNMHTV HDSDAKLANA SPAAENVVEK VEGSSPTDGY TDNGENVSEM  960
GASMEINSPN QDVVANAVTT GESSMEETNA VTEETN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.0298283800Cell division cycle 5-like protein
5xjc_L0.0298283800Cell division cycle 5-like protein
5yzg_L0.0298283800Cell division cycle 5-like protein
5z56_L0.0298283800Cell division cycle 5-like protein
5z57_L0.0298283800Cell division cycle 5-like protein
5z58_L0.0298283800Cell division cycle 5-like protein
6ff4_L0.0298283800Cell division cycle 5-like protein
6ff7_L0.0298283800Cell division cycle 5-like protein
6icz_L0.0298283800Cell division cycle 5-like protein
6id0_L0.0298283800Cell division cycle 5-like protein
6id1_L0.0298283800Cell division cycle 5-like protein
6qdv_O0.0298283800Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212231KKRELKAAGIDIRQRKRKRK
2226231RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g06530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493915.20.0cell division cycle 5-like protein
RefseqXP_014493917.10.0cell division cycle 5-like protein
RefseqXP_014493920.10.0cell division cycle 5-like protein
RefseqXP_014493922.10.0cell division cycle 5-like protein
RefseqXP_014493923.10.0cell division cycle 5-like protein
RefseqXP_022634244.10.0cell division cycle 5-like protein
RefseqXP_022634245.10.0cell division cycle 5-like protein
RefseqXP_022634246.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A1S3TJG60.0A0A1S3TJG6_VIGRR; cell division cycle 5-like protein
STRINGXP_007151972.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]