PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g05100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 30015.4 Da PI: 5.4221 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.4e-18 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++lv v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Vradi02g05100.1 8 RGPWTEEEDLKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.3e-16 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+ l +++ ++G++ W++Iar+++ gRt++++k++w++++ Vradi02g05100.1 61 RGKLTSQEEHLVMELHSKWGNR-WSRIARKLP-GRTDNEIKNFWRTFM 106 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.353 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-29 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-16 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.71E-12 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.491 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-12 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 61 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-22 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.28E-8 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MVQEEMRRGP WTEEEDLKLV YFVNMFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPDLK 60 RGKLTSQEEH LVMELHSKWG NRWSRIARKL PGRTDNEIKN FWRTFMRKKK ALEKKRASPS 120 SSSSSSSLSS INHAVDSHAS KEVGEESFYD TGGYGHDDVM GLISAGEEFS LDDIWKDIVL 180 SEDNNNNIQQ EPLYELQSQE GCNFSSPPAM IYSPSSWEYN SSHPLWVMDE EESNKMLFPA 240 TSDQYYYSCY EQGNAFLTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-29 | 5 | 109 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-28 | 1 | 109 | 51 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-28 | 1 | 109 | 51 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g05100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519116.1 | 0.0 | transcription factor MYB59 | ||||
Swissprot | Q9LX82 | 1e-73 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A1S3VL79 | 0.0 | A0A1S3VL79_VIGRR; transcription factor MYB59 | ||||
STRING | GLYMA11G15180.6 | 1e-117 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 4e-74 | myb domain protein 48 |
Publications ? help Back to Top | |||
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