PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g04340.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 314aa    MW: 34609.6 Da    PI: 6.319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g04340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.2e-13204249655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR +i +++ +L++l+P+     +k  + a++L +A+eYIk+Lq
  Vradi02g04340.1 204 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAIEYIKDLQ 249
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-16201255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-13202253No hitNo description
Gene3DG3DSA:4.10.280.106.7E-15203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-10204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-14204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MESDLQQHPP MFLDHHQQPT NSGLTRYRSA PSSYFSSIID RYAAVRGMGT VGAANNSTEE  60
ANFSPVTRMK NAPNYSSGLM SSRAEIGNKN NTQNNAENEG FAESQGNEFI PGFPVGSWDD  120
SVIMSDNMTG LKRHREEDVK PFSGLNLPES QNEAGGQPST ALAHQLSLPN TSAEMAAIEK  180
FLQLSDSVPC KIRAKRGCAT HPRSIAERVR RTKISERMRK LQDLVPNMDK QTNTADMLDL  240
AIEYIKDLQK QVEGDPGGNW KFAFLQLGSS ITLKGDVMLY EHRKVVNGLG PFESERAHGY  300
DRGVENGLMS QDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g04340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311180.0KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494205.11e-155transcription factor bHLH122
RefseqXP_022634122.11e-155transcription factor bHLH122
TrEMBLA0A1S3TKC21e-154A0A1S3TKC2_VIGRR; transcription factor bHLH122
STRINGXP_007131988.11e-146(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-59bHLH family protein