PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g04040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||
Protein Properties | Length: 250aa MW: 27292 Da PI: 4.6622 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.5 | 2.4e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ Vradi02g04040.1 4 QCDVCEKAPATVICCADEAVLCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP | |||||||
2 | zf-B_box | 28.5 | 3.1e-09 | 53 | 85 | 2 | 34 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 + ++C+ +++k + +fC +++ llC+dC + +H Vradi02g04040.1 53 KLPRCDICQDKAAFIFCVEDRALLCKDCDEPIH 85 789***************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.286 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.53E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.8E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.9E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.0E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.485 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-7 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.31E-6 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090351 | Biological Process | seedling development | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003712 | Molecular Function | transcription cofactor activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MKIQCDVCEK APATVICCAD EAVLCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPRCDIC 60 QDKAAFIFCV EDRALLCKDC DEPIHVAGSL SANHQRFLAT GIRVALGSNC TKGNEKGHME 120 PSNPNAQEVP VKVPSQQVPS FTSSWAVDDL LELTDFESAD KVRQLCFTTA AQKQSLEFGE 180 LEWLADAGLF GEQFPEEPLA AAEVPQLPVT HTSNAVSQKA SKSFMSYKKP RIEVLDEDDE 240 EHFTVPDLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g04040.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093231 | 0.0 | BT093231.1 Soybean clone JCVI-FLGm-17C19 unknown mRNA. | |||
GenBank | KT031264 | 0.0 | KT031264.1 Glycine max clone HN_CCL_190 C2C2-Zn CO-like transcription factor (Glyma11g13570.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494367.1 | 1e-174 | B-box zinc finger protein 24 | ||||
Swissprot | Q96288 | 2e-98 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | A0A1S3TKS7 | 1e-173 | A0A1S3TKS7_VIGRR; B-box zinc finger protein 24 | ||||
STRING | XP_007131941.1 | 1e-164 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3438 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 2e-98 | DBB family protein |
Publications ? help Back to Top | |||
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