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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g03790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 865aa MW: 99619.6 Da PI: 9.0481 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.8 | 3.9e-13 | 43 | 118 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p f+++ +++ + +l +sg W+v++ kk++ +++ +GW +F +n + Df++F+++g ++f +v++f k Vradi02g03790.1 43 KVPEGFLKHLNED---FQNAVLIGPSGDNWQVTI--LKKGNNIYMHNGWPQFLTDNSVMIDDFLLFTYHGGNCF--HVQIFGK 118 6788888444433...3479**************..9********************************99***..***9987 PP | |||||||
2 | B3 | 61.4 | 1.5e-19 | 205 | 298 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +t+ +v ++ l + +fa++h +e+ k+++l +++g+ Wev +++ +++++ + +t+GW +Fv++n+L gD+++F+l++ + +l v+ Vradi02g03790.1 205 LMTKCNVEDHCTLPIATEFARKHI--PETVKQIVLWNTEGKFWEVVVTWfgCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELED--QNHLSVH 294 677889999**************4..334457*****************8877777799***********************965..66679** PP EE-S CS B3 96 vfrk 99 +fr+ Vradi02g03790.1 295 IFRT 298 9996 PP | |||||||
3 | B3 | 53.6 | 4e-17 | 338 | 428 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +t+ +v ++ l + kfa+++ +ee k++ + +++g W+v ++++++ +++GW++Fv++n+L gD+++F+l+ ++ +l+v++ Vradi02g03790.1 338 HLMTKCHVEGRCVLPIATKFARKYI--PEEVKQIHIGNSEGTLWKVHVSWSRGY--AHFATGWSNFVRDNKLMRGDTCIFELE--ENLHLRVHI 425 56788899999*************4..3344579**************765555..34788********************85..678889999 PP E-S CS B3 97 frk 99 f++ Vradi02g03790.1 426 FKT 428 986 PP | |||||||
4 | B3 | 47.6 | 3e-15 | 451 | 525 | 17 | 97 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +lp +f++++gg+ s +tl ++g +W+v l +k +++y++++GW+eF + + +g +vF+++g+s+f +v+vf Vradi02g03790.1 451 RLPDDFMRKYGGE--LSPIVTLSVPDGSVWRVGL--KKADNKYWFRDGWQEFIQHYSIGVGYLLVFRYEGKSGF--NVHVF 525 79********887..7779***************..**********************************9999..77777 PP | |||||||
5 | B3 | 53.6 | 4.1e-17 | 730 | 820 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 vl ps+ + ++++lp fae+h +g++ ++l+ ++gr+W v++ yr ++ l++GW eF +n+L egD++vF+l + +e l v++ Vradi02g03790.1 730 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRCLYRVGR--AKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTI 818 78899******************877743...59**************777776..55***********************9988888899999 PP E- CS B3 97 fr 98 fr Vradi02g03790.1 819 FR 820 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.42 | 27 | 119 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-17 | 27 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-16 | 28 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.41E-10 | 30 | 116 | No hit | No description |
SMART | SM01019 | 7.7E-13 | 32 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-9 | 43 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-23 | 194 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-22 | 197 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.339 | 202 | 299 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-8 | 202 | 299 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-16 | 205 | 298 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.47E-17 | 206 | 297 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-21 | 328 | 429 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-21 | 329 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.015 | 336 | 429 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-7 | 336 | 429 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-14 | 339 | 428 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.35E-13 | 340 | 427 | No hit | No description |
SMART | SM01019 | 3.4E-9 | 447 | 528 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.12E-14 | 451 | 526 | No hit | No description |
Pfam | PF02362 | 1.5E-12 | 451 | 525 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-18 | 451 | 526 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-19 | 451 | 526 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.843 | 452 | 528 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-23 | 719 | 820 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.27E-23 | 720 | 821 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.66E-20 | 725 | 820 | No hit | No description |
SMART | SM01019 | 2.3E-14 | 727 | 822 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.606 | 727 | 822 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-15 | 730 | 820 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 865 aa Download sequence Send to blast |
MRDFSFYQKA LIVQGNGREM WQMDYYRGNP VFFVIINNSK LQKVPEGFLK HLNEDFQNAV 60 LIGPSGDNWQ VTILKKGNNI YMHNGWPQFL TDNSVMIDDF LLFTYHGGNC FHVQIFGKNG 120 LERLCFKQTR QDQVLIPSLV RTKKNTHRRT SSSPFLHQAK PCKKGLSFSN KFSFSKLKSS 180 VKIESSEACY LADSFTSRNP HWKHLMTKCN VEDHCTLPIA TEFARKHIPE TVKQIVLWNT 240 EGKFWEVVVT WFGCQNKRYT RFTTGWGRFV RDNRLMRGDT CIFELEDQNH LSVHIFRTGF 300 YLSPPKDFPT PQHSVDIESS EALKLAESFT SSKPYWKHLM TKCHVEGRCV LPIATKFARK 360 YIPEEVKQIH IGNSEGTLWK VHVSWSRGYA HFATGWSNFV RDNKLMRGDT CIFELEENLH 420 LRVHIFKTRC APKDWLSGCE EKSENFFWDK RLPDDFMRKY GGELSPIVTL SVPDGSVWRV 480 GLKKADNKYW FRDGWQEFIQ HYSIGVGYLL VFRYEGKSGF NVHVFNLATS EINYQSAIRC 540 SNEGPHFANL LKFFEEMDDE DSIEILDSSP SHLAPSSLQR VLACSVDKMS PAKSYTPPAL 600 QNLFNGSKLN SINWGEGGDA HCSKSANSLD NRFTRDIGVQ FNAVEFKRST EELKLRASME 660 ERMKKTARKK RKSGLDGQEA SAEQEEEVDM RFRFYESASA RKRTVTAEER ERAISAAKAF 720 EPPNPFCRVV LRPSYLYRGC IMYLPSCFAE KHLNGVSGFI KLQISNGRQW PVRCLYRVGR 780 AKLSQGWFEF SLENNLGEGD VCVFELLRMK EVVLQVTIFR ITEEVGMLKP PPSQQNQNMS 840 SAKLLNNPLQ QHLSSTQMGD FIGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-68 | 693 | 825 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-68 | 693 | 825 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g03790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D6LII4 | 0.0 | A0A4D6LII4_VIGUN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-111 | B3 family protein |