PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g02960.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 356aa    MW: 39585.3 Da    PI: 6.6619
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g02960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18272305134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+C++ kTp+WR gp g+ktLCnaCG+++++ +
  Vradi02g02960.1 272 CSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 305
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-14264327No hitNo description
SMARTSM004012.1E-14266320IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14270303IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.174270302IPR000679Zinc finger, GATA-type
CDDcd002024.88E-14271328No hitNo description
PfamPF003201.9E-16272305IPR000679Zinc finger, GATA-type
PROSITE patternPS003440272297IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSRSECTKTK TKTKRDKDKP IPQTPVSLNQ RKLHCTFLPL SFFSKQEPEK MEVAAAEALK  60
PSLRTEFIFP QAICDEIFCF NANNIVVGED FSVDDLLDFS NGEFQLGKDF DVYEEEEDEE  120
KDSTSGSSQE RSEDDSNSNS TGAGGVGDSD SVFAGELSVP ADDVADLEWV SHFVDDSLPE  180
LSLLYPVPSE QTRVWAEPKP RPGRAQNGST IPRRPRTGKN RKPNARVWSF TVSPPSLCFS  240
VLAGSVEFGE PTAKKQKKKA EAQIGAQFQR RCSHCQVQKT PQWRTGPLGP KTLCNACGVR  300
FKSGRLFPEY RPACSPTFSG DIHSNSHRKV LEMRRRKEIS EPQTGSDRPQ LVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g02960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492524.10.0GATA transcription factor 7
RefseqXP_014492528.10.0GATA transcription factor 7
RefseqXP_022633750.10.0GATA transcription factor 7
TrEMBLA0A1S3TFH70.0A0A1S3TFH7_VIGRR; GATA transcription factor
STRINGXP_007131760.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.12e-50GATA transcription factor 7