PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g02890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 364aa MW: 40394.9 Da PI: 6.19 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26 | 2e-08 | 149 | 197 | 3 | 51 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 e k +r N+eA r++R++Kka+ + Le++v +L a N+ L k+l++ Vradi02g02890.1 149 EKKSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQN 197 5688899999**********************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.9E-13 | 145 | 215 | No hit | No description |
SMART | SM00338 | 7.7E-10 | 147 | 214 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.864 | 149 | 196 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.3E-11 | 149 | 204 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.44E-6 | 151 | 198 | No hit | No description |
CDD | cd14686 | 2.25E-10 | 153 | 206 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MVIDGVFGKR VVLRIRNYSE RVIGINLNRL KLKREKTDKE KVEGGICEAI VSFWFDLGIS 60 VQMDDGELDF STQEVFSSPN MGELPSSGSM DSFFDELLKD THACTHTHTC NPPGPDFSHT 120 HTCYHVHTKI VPAPDEDQVA TDDTAESAEK KSKKRPLGNK EAVRKYREKK KARAASLEDE 180 VVKLRALNQH LMKKLQNQAA LEAEIARLKC LLVDIRGRIE GEIGSFPYQK SPNANPPVVN 240 LPGSYVMNPC NMQCDDRVYC LHPGADGRIM ENVSSLNGEE FGGCEFENLQ CLANQNLGLK 300 ELRACGVGQA GSNVNSSASK RKDGHAETTF LFIFGIVCLL TFGDLVQQQL VEELTERWFS 360 SLP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g02890.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494476.1 | 0.0 | basic leucine zipper 23 | ||||
Refseq | XP_014494477.1 | 0.0 | basic leucine zipper 23 | ||||
Refseq | XP_014494478.1 | 0.0 | basic leucine zipper 23 | ||||
Swissprot | Q8GTS2 | 1e-107 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A4D6LJG2 | 0.0 | A0A4D6LJG2_VIGUN; Serine/threonine-protein kinase PBS1 | ||||
STRING | XP_007131714.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2567 | 32 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 2e-91 | bZIP family protein |
Publications ? help Back to Top | |||
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