PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g02130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 311aa    MW: 34840.3 Da    PI: 6.4192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g02130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH222.9e-07756154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     rr+ +  rE+ RRdr+N+ f  L  +l ++     +K++Ka++   +++ +++L
  Vradi02g02130.1  7 RRTQKADREKLRRDRLNEQFVALVNILDPD----RPKNDKATVIDDTIQLLHDL 56
                     79999**********************997....79*********999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-12574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-10677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.909656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-5756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-6761No hitNo description
SMARTSM003533.2E-41262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDCTSARRTQ KADREKLRRD RLNEQFVALV NILDPDRPKN DKATVIDDTI QLLHDLTSQV  60
SKLKDEYGAL NEESCELARE KNDLREEKAS LQSDIEKLNC QYQQQLRTVS PWTAMDHSVM  120
VVPPSYPYPV PMPIPPSPIA MQPYPFYANQ HSAIIPNPCP TYVPYLVPNT LVEQQSIQHI  180
APPLHPGFQS HMSGKQESRN KCKESMVDKH EDSNDVTADQ TSGFSADQVS VALLLKKSSN  240
LYAIAVIKEV WIQVVFVFWV LQDLSSGQIK SSELSRRQSS CTEVSSLGRC SSSRSVEESS  300
SSSVVHQHKG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g02130.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518636.11e-171transcription factor bHLH121
SwissprotQ9LT232e-73BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A1S3VJU71e-169A0A1S3VJU7_VIGRR; transcription factor bHLH121
STRINGXP_007131595.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-70bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]