PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g01580.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 411aa    MW: 45063.1 Da    PI: 5.3279
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g01580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3043.6e-9323202328
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++ L+ecA  v+s+   +a + Larl++ +s++g+p+qR+ +yf eAL++++        ++ +p+++++++s+e + ++k++++++P+ kf+h
  Vradi02g01580.1   2 RSSLTECASLVESEPD-QAAESLARLRKSVSQHGNPTQRVGFYFCEALSRKIWA----EQDKGEPKSAKTTTSEELTLSYKALNDACPYSKFAH 90 
                      789********99655.566789******************************9....3344566777777899******************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ltaNqaIlea+e ++ +Hi+Df+i qG+QW+aLlqa+a+R++g+p +++i g+ + + g     +l++tg+rL++fA+ l+++fef++ + + +
  Vradi02g01580.1  91 LTANQAILEATEDASNIHILDFGIVQGIQWAALLQAFATRSSGKPnKIKISGIPAIALGasPGPSLSATGNRLSEFAKLLDLNFEFTP-ILTPI 183
                      *****************************************77776*********88889899*************************.799** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +dl+ +++ ++p+EalaVn++lql++llde+ +  +   + L+l ksl+Pk+v++ e ea++++  F++rf  a++y+sa+f+sl+ +l+++s 
  Vradi02g01580.1 184 HDLDRNSFCIDPDEALAVNFMLQLYNLLDEPPTAVD---TALRLAKSLNPKIVTLGEYEASLTRVGFVNRFKTAFRYFSAVFESLDPNLAADSP 274
                      ****************************99999888...******************************************************* PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                      er  vE  llgr+i  v+     +  e +e  e+Wr+ +e+aGF++ +
  Vradi02g01580.1 275 ERFQVESLLLGRRIDAVIGPGPVR--ESMEDREQWRALMERAGFESFR 320
                      *****************9998887..9*****************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.6111346IPR005202Transcription factor GRAS
PfamPF035141.2E-902320IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MRSSLTECAS LVESEPDQAA ESLARLRKSV SQHGNPTQRV GFYFCEALSR KIWAEQDKGE  60
PKSAKTTTSE ELTLSYKALN DACPYSKFAH LTANQAILEA TEDASNIHIL DFGIVQGIQW  120
AALLQAFATR SSGKPNKIKI SGIPAIALGA SPGPSLSATG NRLSEFAKLL DLNFEFTPIL  180
TPIHDLDRNS FCIDPDEALA VNFMLQLYNL LDEPPTAVDT ALRLAKSLNP KIVTLGEYEA  240
SLTRVGFVNR FKTAFRYFSA VFESLDPNLA ADSPERFQVE SLLLGRRIDA VIGPGPVRES  300
MEDREQWRAL MERAGFESFR QRGFVGSGGD VSQIYGPYGW LCCVSLSCCN EAPCVPGTAE  360
TGKMNQPLYE SRARSLIELD LAKGPINVDY TLSQIHQWQP NQNVGMKGKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-11643317338GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g01580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522771.10.0scarecrow-like protein 4 isoform X2
SwissprotA0A024B7I01e-149SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1S3VWK40.0A0A1S3VWK4_VIGRR; scarecrow-like protein 4 isoform X2
STRINGXP_007131529.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-143GRAS family protein