PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0294s00140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 292aa    MW: 32957.3 Da    PI: 9.3913
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0294s00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-10103148348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rWT++E+ l++ +    G g+Wk I++     +++ q+ s+ qky+
  Vradi0294s00140.1 103 RWTEDEHRLFLLGLIACGEGNWKGISELYVVSKSPSQVASHAQKYK 148
                        9*****************************99************97 PP
2Myb_DNA-binding34.64.3e-11215258347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         WT++E++l+v +++++  + Wk +++ +   +t+ q+ s+  ky
  Vradi0294s00140.1 215 HWTEDEHKLFVLGHAKYQEN-WKEVSKNFVPSKTPTQIASHAKKY 258
                        5*****************88.*********9***********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.42796152IPR017930Myb domain
SuperFamilySSF466894.56E-1398152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1499151IPR006447Myb domain, plants
SMARTSM007172.0E-7100150IPR001005SANT/Myb domain
CDDcd001673.89E-7103148No hitNo description
PfamPF002492.5E-8103148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-5103146IPR009057Homeodomain-like
PROSITE profilePS5129412.103208263IPR017930Myb domain
SuperFamilySSF466891.25E-12209263IPR009057Homeodomain-like
SMARTSM007177.3E-8212261IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.2E-10212262IPR006447Myb domain, plants
PfamPF002498.4E-9215258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-9215257IPR009057Homeodomain-like
CDDcd001671.76E-7216259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKAPAIMNPS LDHSPDPVAL VANNIQSCGE NLFVGVHDQG VAFAYSHAPP PSNVVPTTTN  60
TQLPSPHNIT LSNHVASDWV QMSNNSNHLY SDKLKSHHKR YERWTEDEHR LFLLGLIACG  120
EGNWKGISEL YVVSKSPSQV ASHAQKYKIR QNASTKNKKR KSIHEVSIEP SKHALPAYIM  180
SLDETSFKDD VLNCAYHMES CNNSIVAVPH KKWKHWTEDE HKLFVLGHAK YQENWKEVSK  240
NFVPSKTPTQ IASHAKKYFI RQNIPENNRK RKSIHDITLQ DIATVVAPSY I*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0294s00140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491845.11e-108uncharacterized protein LOC106754347
SwissprotQ9FNN62e-20SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1S3TDK61e-107A0A1S3TDK6_VIGRR; uncharacterized protein LOC106754347
STRINGXP_007151662.15e-40(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-23MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]