PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 271aa MW: 30642.5 Da PI: 9.6576

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0294s00060.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.3e-09	82	127	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT++E l++ + G g+Wk I++ +++ q+ s+ qky+ Vradi0294s00060.1 82 RWTEDEXRLFLLGLIACGEGDWKGISELYVVSKSPSQVASHAQKYK 127 9***************************99**********97 PP
2	Myb_DNA-binding	36.7	9.7e-12	194	237	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++E++l+v +++++ + Wk +++ + +t+ q+ s+ qky Vradi0294s00060.1 194 HWTKDEHKLFVLGHAKYQEN-WKEVSKNFVPSKTPTQIASHAQKY 237 5***************88.*****9***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.884	75	131	IPR017930	Myb domain
SuperFamily	SSF46689	5.69E-12	77	131	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-13	78	130	IPR006447	Myb domain, plants
SMART	SM00717	3.2E-5	79	129	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-7	82	127	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-4	82	125	IPR009057	Homeodomain-like
CDD	cd00167	1.49E-6	82	127	No hit	No description
PROSITE profile	PS51294	10.954	187	242	IPR017930	Myb domain
SuperFamily	SSF46689	1.01E-13	188	242	IPR009057	Homeodomain-like
SMART	SM00717	9.6E-8	191	240	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	5.1E-11	191	241	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-9	194	237	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-9	194	236	IPR009057	Homeodomain-like
CDD	cd00167	6.24E-7	195	238	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MISPSLAATM ERQGRDDGGV ALAYSHAPTP SCVVPTTNNT QLPSPRNITL XNXVGSDWVQ 60 MSNNSNQLYS YKLKSHHKRY ERWTEDEXRL FLLGLIACGE GDWKGISELY VVSKSPSQVA 120 SHAQKYKIHQ KASTKNKKRK SIXEVSIEPS KHALPTYIMS LDETSFXDDV LNCANQMESC 180 NNSIVAVPCK KWKHWTKDEH KLFVLGHAKY QENWKEVSKN FVPSKTPTQI ASHAQKYFIR 240 QNTTENNKKR KSIHDITLQD IATVVAPSYI *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0294s00060.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-60	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014491845.1	4e-97	uncharacterized protein LOC106754347
Swissprot	Q9FNN6	9e-21	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A1S3TDK6	1e-95	A0A1S3TDK6_VIGRR; uncharacterized protein LOC106754347
STRING	XP_007140122.1	6e-34	(Phaseolus vulgaris)
STRING	XP_007151662.1	7e-34	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	4e-23	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]