PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0294s00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 271aa    MW: 30642.5 Da    PI: 9.6576
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0294s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.3e-0982127348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rWT++E  l++ +    G g+Wk I++     +++ q+ s+ qky+
  Vradi0294s00060.1  82 RWTEDEXRLFLLGLIACGEGDWKGISELYVVSKSPSQVASHAQKYK 127
                        9*****************************99************97 PP
2Myb_DNA-binding36.79.7e-12194237347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         WT++E++l+v +++++  + Wk +++ +   +t+ q+ s+ qky
  Vradi0294s00060.1 194 HWTKDEHKLFVLGHAKYQEN-WKEVSKNFVPSKTPTQIASHAQKY 237
                        5*****************88.*********9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.88475131IPR017930Myb domain
SuperFamilySSF466895.69E-1277131IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1378130IPR006447Myb domain, plants
SMARTSM007173.2E-579129IPR001005SANT/Myb domain
PfamPF002495.1E-782127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-482125IPR009057Homeodomain-like
CDDcd001671.49E-682127No hitNo description
PROSITE profilePS5129410.954187242IPR017930Myb domain
SuperFamilySSF466891.01E-13188242IPR009057Homeodomain-like
SMARTSM007179.6E-8191240IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.1E-11191241IPR006447Myb domain, plants
PfamPF002493.5E-9194237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-9194236IPR009057Homeodomain-like
CDDcd001676.24E-7195238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MISPSLAATM ERQGRDDGGV ALAYSHAPTP SCVVPTTNNT QLPSPRNITL XNXVGSDWVQ  60
MSNNSNQLYS YKLKSHHKRY ERWTEDEXRL FLLGLIACGE GDWKGISELY VVSKSPSQVA  120
SHAQKYKIHQ KASTKNKKRK SIXEVSIEPS KHALPTYIMS LDETSFXDDV LNCANQMESC  180
NNSIVAVPCK KWKHWTKDEH KLFVLGHAKY QENWKEVSKN FVPSKTPTQI ASHAQKYFIR  240
QNTTENNKKR KSIHDITLQD IATVVAPSYI *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0294s00060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-60AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491845.14e-97uncharacterized protein LOC106754347
SwissprotQ9FNN69e-21SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1S3TDK61e-95A0A1S3TDK6_VIGRR; uncharacterized protein LOC106754347
STRINGXP_007140122.16e-34(Phaseolus vulgaris)
STRINGXP_007151662.17e-34(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-23MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]