PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 286aa MW: 32448.6 Da PI: 9.5193

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0294s00050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.2	5.7e-11	97	142	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT++E+ l++++ G g+Wk I++ +++ q+ s+ qky+ Vradi0294s00050.1 97 RWTEDEHRLFLRGLIACGEGDWKGISELYVVSKSPSQVASHAQKYK 142 9***************************99**********97 PP
2	Myb_DNA-binding	37.3	6.5e-12	209	252	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++E++l+v +++++ + Wk +++ + +t+ q+ s+ qky Vradi0294s00050.1 209 HWTEDEHKLFVLGHAKYQEN-WKEVSKNFVPSKTPTQIASHAQKY 252 5***************88.*****9***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.303	90	146	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-13	92	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-15	93	145	IPR006447	Myb domain, plants
SMART	SM00717	1.4E-6	94	144	IPR001005	SANT/Myb domain
CDD	cd00167	1.46E-7	97	142	No hit	No description
Pfam	PF00249	7.1E-9	97	142	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-6	97	140	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.527	202	257	IPR017930	Myb domain
SuperFamily	SSF46689	3.98E-14	203	257	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-11	206	256	IPR006447	Myb domain, plants
SMART	SM00717	7.5E-8	206	255	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-9	209	252	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-9	209	251	IPR009057	Homeodomain-like
CDD	cd00167	5.67E-7	210	253	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MNPSLDLSPD LVALVTNNIQ SSGEDLFVGV HDQGVPLAYS HAPTPSYVVP TTNNTQLPSP 60 RNITLSNHVG SDWVQISNNS NQLYSYKLKS HHKRYERWTE DEHRLFLRGL IACGEGDWKG 120 ISELYVVSKS PSQVASHAQK YKIHQKASTK NKKRKSIHEV SIEPSKHALP AWIMSLDETS 180 FKDDVLNCGN HMESCNNSIV TVPRKKWKHW TEDEHKLFVL GHAKYQENWK EVSKNFVPSK 240 TPTQIASHAQ KYFIRQNTAE NNKKRKSIHD ITLQDIATVV TPSYI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0294s00050.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	6e-72	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014491845.1	1e-99	uncharacterized protein LOC106754347
Swissprot	Q9FNN6	1e-22	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A1S3TDK6	3e-98	A0A1S3TDK6_VIGRR; uncharacterized protein LOC106754347
STRING	XP_007140122.1	2e-37	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	6e-25	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]