PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0273s00140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 455aa    MW: 50185.6 Da    PI: 8.2442
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0273s00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29234291359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg++WrKYGqK  kg+++pr+YYrCt+a gCpv+k+v+r++ed++v+++tYeg+Hnh+
  Vradi0273s00140.1 234 DGCQWRKYGQKISKGNPCPRAYYRCTMAlGCPVRKQVQRCTEDKSVLITTYEGNHNHP 291
                        9********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-32217293IPR003657WRKY domain
SuperFamilySSF1182909.81E-27226293IPR003657WRKY domain
PROSITE profilePS5081129.356227293IPR003657WRKY domain
SMARTSM007746.7E-35232292IPR003657WRKY domain
PfamPF031068.7E-26234291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMENHHKMQQ HRRQITLLGS TNLDLDSTTV NTIKELDFFS STSPSNNTHT DNLHHLPSNI  60
PKDNGSQPLF TDHFVNTTLN LMCPSQSDEL SKSAAIDQNL KSPLNTLQKE FLRLQEENYR  120
LRMMLDQVTQ NYHHLQFFIA MQKQKPFQKV EKKEMMSGHH LMDPQSCTKL DAKVVASVSD  180
DKSSQEAHPD RVEDVIEQSS SKSPKFEESK PGEPPLRRTR VSVRARSEAP VICDGCQWRK  240
YGQKISKGNP CPRAYYRCTM ALGCPVRKQV QRCTEDKSVL ITTYEGNHNH PLPPSATVMA  300
NSTSAAATMF LSSSGSTTTS NEALNNSVGV FSSMYLSASA PFPTITLDMT NNNPMQLHRD  360
TSSFPLHATT FPQLPGHPII FPHKLQHSPG QKQPSFMTDI MTAAVASNPN FTVALAAAIS  420
SIIGAPRSND GNNIYSNNGG NVLALGTSML PGST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-21223293877Probable WRKY transcription factor 4
2ayd_A6e-21219294175WRKY transcription factor 1
2lex_A6e-21223293877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0273s00140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414241.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0S3SQW20.0A0A0S3SQW2_PHAAN; Uncharacterized protein
STRINGXP_007145091.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-67WRKY family protein