PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0271s00050.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 523aa    MW: 57622.3 Da    PI: 5.0691
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0271s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.23.5e-1351585131374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv+ L++cAeav++++l  a++l++++  la ++  +m+++a+yf+eALa+r++r        + p + s    s++l +   f+e++P+ k
  Vradi0271s00050.1 158 LVHSLMACAEAVENNNLVVAESLVKQIGFLAVSQVGAMRKVATYFAEALARRIYR--------VFPLQHS---ISDSLEI--NFYETCPYTK 236
                        689****************************************************........3344443...5555555..4********* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        f+h+taNqaIlea++g++rvH+iDf+i+qG+QWpaLlqaLa Rp+gpp +R+Tg+g+p+++++++l+e+g++La++Ae+++v+fe++ +v++
  Vradi0271s00050.1 237 FAHFTANQAILEAFQGKSRVHVIDFGINQGMQWPALLQALALRPGGPPAFRLTGIGPPAADNSDQLQEVGWKLAQLAETIHVQFEYRGFVTN 328
                        ******************************************************************************************** PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        +l+dl+ ++L+++++E +aVn+v++ h+ll++++++e+    vL++v++++P++++vveqe++hn+ +Fl+rf+e+l+yys+lfds+e +  
  Vradi0271s00050.1 329 SLADLDASMLDLREDEPVAVNSVFEFHKLLARPGAIEK----VLSVVRKIRPEILTVVEQESNHNGLRFLDRFTESLHYYSTLFDSVEGS-- 414
                        **************************************....*********************************************999.. PP

               GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                        + + +++ + +++lg++i+nvvaceg +r+erhetl++Wr+r+++ GF pv+l+++a kqa++ll+ ++ +dgyrvee+sg+l+lgW++r+L
  Vradi0271s00050.1 415 PMNPQNKAMTEVYLGNQICNVVACEGIDRVERHETLNQWRKRFSSTGFCPVHLGSNAFKQASMLLALFAgGDGYRVEENSGCLMLGWHTRAL 506
                        6778888888899******************************************************************************* PP

               GRAS 368 vsvSaWr 374
                        +++SaW+
  Vradi0271s00050.1 507 IATSAWQ 513
                        ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577117No hitNo description
PfamPF120411.5E-283499IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.7E-2734106No hitNo description
PROSITE profilePS5098565.134132492IPR005202Transcription factor GRAS
PfamPF035141.2E-132158513IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MKREREQLGS SAGTSSCGYS SSKSNIWDEE GGMDELLAVV GYKVRSSDMA EVAQKLERLE  60
EAMGNIQDGL KELSDGAAHY NPSDISNWLE TMLCNFDSLP PEEPDTGYPS SDYDLKAIPG  120
KAIYDGGVST MPNPKRLKST ESTCAFLVVD SQENGIRLVH SLMACAEAVE NNNLVVAESL  180
VKQIGFLAVS QVGAMRKVAT YFAEALARRI YRVFPLQHSI SDSLEINFYE TCPYTKFAHF  240
TANQAILEAF QGKSRVHVID FGINQGMQWP ALLQALALRP GGPPAFRLTG IGPPAADNSD  300
QLQEVGWKLA QLAETIHVQF EYRGFVTNSL ADLDASMLDL REDEPVAVNS VFEFHKLLAR  360
PGAIEKVLSV VRKIRPEILT VVEQESNHNG LRFLDRFTES LHYYSTLFDS VEGSPMNPQN  420
KAMTEVYLGN QICNVVACEG IDRVERHETL NQWRKRFSST GFCPVHLGSN AFKQASMLLA  480
LFAGGDGYRV EENSGCLMLG WHTRALIATS AWQLAAKSVV VL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6515351213377Protein SCARECROW
5b3h_D6e-6515351213377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0271s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492379.10.0DELLA protein GAI1
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1S3TF410.0A0A1S3TF41_VIGRR; DELLA protein GAI1
STRINGXP_007156503.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein