PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0262s00020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 224aa    MW: 25598.9 Da    PI: 5.7704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0262s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-17550348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +WT+eEd ll+++++q+G g W++++   g++R++k+c++rw++yl
  Vradi0262s00020.1  5 AWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                       7*******************************************97 PP
2Myb_DNA-binding49.21.2e-1556100147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++ +eE e +++++k+lG++ W++Ia +++ gRt++++k++w+ +
  Vradi0262s00020.1  56 RGNFAEEEVEMIIKLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100
                        8999******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.777150IPR017930Myb domain
SMARTSM007175.8E-13252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-21557IPR009057Homeodomain-like
SuperFamilySSF466897.7E-28597IPR009057Homeodomain-like
PfamPF002491.1E-15550IPR001005SANT/Myb domain
CDDcd001674.65E-10550No hitNo description
PROSITE profilePS5129424.63351105IPR017930Myb domain
SMARTSM007172.8E-1555103IPR001005SANT/Myb domain
PfamPF002491.9E-135698IPR001005SANT/Myb domain
CDDcd001672.07E-1058101No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2458105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIQQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIKRGNFA  60
EEEVEMIIKL HKLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKRLNAQEA EDKGGSRDVE  120
VIRPQARNMG SSSVKKRSEG VPPREKAVEQ ESSMSSLTFD ADGQNQVVES QEENIYACLD  180
QQGIVNEYSM DFQLEGFEDM MKGEGSSSQW DWGDLLLDMD LYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-22610710110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0262s00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492680.11e-166transcription factor MYB113-like
SwissprotQ9FNV96e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1S3TFY71e-164A0A1S3TFY7_VIGRR; transcription factor MYB113-like
STRINGXP_007140451.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]