PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0234s00080.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TALE

Protein Properties

Length: 694aa MW: 75166.6 Da PI: 7.7132

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0234s00080.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.5	1.1e-08	399	436	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL +qV++WF N R + Vradi0234s00080.1 399 FEHflHPYPKDSDKVMLAKQTGLARSQVSNWFINARVR 436 664459******************************88 PP
2	BELL	119.6	1.4e-38	263	334	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kk+kL+++l+eV++rY+qy++q+q+v+ssFe +ag+g+ak+Yt+lAlk+iS++FrcLkdai+ qi Vradi0234s00080.1 263 QRQELQMKKSKLVNMLDEVEQRYRQYHQQMQIVVSSFERAAGYGAAKSYTALALKTISKQFRCLKDAISAQI 334 69********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.0E-74	188	332	IPR006563	POX domain
Pfam	PF07526	4.1E-50	194	331	IPR006563	POX domain
PROSITE profile	PS50071	11.726	377	440	IPR001356	Homeobox domain
CDD	cd00086	2.03E-11	380	440	No hit	No description
SMART	SM00389	1.3E-8	380	444	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.92E-16	381	448	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.7E-28	383	447	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-17	397	436	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MATYFHGSTS EIQSSADGLQ TLYLMNPSYV PYADAPHHPT LLVNPNATNA LNLATLTHAP 60 PVSPSPNHQQ HVIHGMTNIL GSGNSDEHAH TRPSLFGENI AAFHGFSGGA SSAAPRVHYN 120 LWGSGVDQPG TPSSSSGGGG FRRPSQQGLS LSLSSQQTNF RSVSGELDIG GQGHVAGTGN 180 SPTSAASTGV SGLILGSKYL KAAQELLDEV VNVGKGIYKE EKFSEKVKAN RESTNSGAGG 240 GDGSSGGGEN SAGKQVVELS TAQRQELQMK KSKLVNMLDE VEQRYRQYHQ QMQIVVSSFE 300 RAAGYGAAKS YTALALKTIS KQFRCLKDAI SAQIKATSKT LGEDDCLGVK VEGSRLRYVD 360 HHLRQQRALQ QLGMIQPNAW RPQRGLPERA VSILRAWLFE HFLHPYPKDS DKVMLAKQTG 420 LARSQVSNWF INARVRLWKP MVEEMYMEEM KDHEQANGSE NTRSKELSKE VNVAAESGGI 480 KLDNFQPKQD NFNNQNTSPN EFSANSSMSP IGGSLQSHSG FHLAGSSEVQ TSPNKPRSTE 540 MQNSPSSILS VDMEMKHNGE HANTREANTK FGIERHDKDG YPLMSGGFGA FTMEDIGNRF 600 NVSTEQLASR FHGNGVSLTL GLPHNENLSM SGTPHGFLSQ NIHLGRRLEM GTSGNEFCAI 660 NTPPSSHSGT TYESIDIQNR KRFVAQLLPD FVA*

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MATYFHGSTS EIQSSADGLQ TLYLMNPSYV PYADAPHHPT LLVNPNATNA LNLATLTHAP  60
PVSPSPNHQQ HVIHGMTNIL GSGNSDEHAH TRPSLFGENI AAFHGFSGGA SSAAPRVHYN  120
LWGSGVDQPG TPSSSSGGGG FRRPSQQGLS LSLSSQQTNF RSVSGELDIG GQGHVAGTGN  180
SPTSAASTGV SGLILGSKYL KAAQELLDEV VNVGKGIYKE EKFSEKVKAN RESTNSGAGG  240
GDGSSGGGEN SAGKQVVELS TAQRQELQMK KSKLVNMLDE VEQRYRQYHQ QMQIVVSSFE  300
RAAGYGAAKS YTALALKTIS KQFRCLKDAI SAQIKATSKT LGEDDCLGVK VEGSRLRYVD  360
HHLRQQRALQ QLGMIQPNAW RPQRGLPERA VSILRAWLFE HFLHPYPKDS DKVMLAKQTG  420
LARSQVSNWF INARVRLWKP MVEEMYMEEM KDHEQANGSE NTRSKELSKE VNVAAESGGI  480
KLDNFQPKQD NFNNQNTSPN EFSANSSMSP IGGSLQSHSG FHLAGSSEVQ TSPNKPRSTE  540
MQNSPSSILS VDMEMKHNGE HANTREANTK FGIERHDKDG YPLMSGGFGA FTMEDIGNRF  600
NVSTEQLASR FHGNGVSLTL GLPHNENLSM SGTPHGFLSQ NIHLGRRLEM GTSGNEFCAI  660
NTPPSSHSGT TYESIDIQNR KRFVAQLLPD FVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	386	443	1	58	Homeobox protein Meis1
4xrs_B	2e-16	386	443	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0234s00080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014490416.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_014490417.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_022633119.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-144	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1S3T9H8	0.0	A0A1S3T9H8_VIGRR; BEL1-like homeodomain protein 1
STRING	XP_007150021.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-132	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]