PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0228s00170.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 160aa    MW: 17607.1 Da    PI: 9.3591
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0228s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY146.82.2e-45101542160
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                        d++  se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++ +  + +  + +h           +l   ++ + sn +k +++s
  Vradi0228s00170.1  10 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDH-----------TLS-LQQGFYSNAKKGQASS 89 
                        77899*************************************9866555544444444443...........222.2333444433333332 PP

              YABBY  94 tsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                        +s s    +++++  +p++   v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaakn 
  Vradi0228s00170.1  90 SSSSP---TTSNESVSPKAASfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNV 154
                        22222...244455666666669********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.0E-5314153IPR006780YABBY protein
SuperFamilySSF470953.14E-7101151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MNHEDKLTMD LVPPSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP  60
PNSQNQSIDH TLSLQQGFYS NAKKGQASSS SSSPTTSNES VSPKAASFVV KPPEKKHRLP  120
SAYNRFMKEE IQRIKAANPE IPHREAFSAA AKNVIIFLF*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0228s00170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0119241e-150KR011924.1 Thermopsis turcica CRABS CLAW mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029127040.11e-103protein CRABS CLAW isoform X1
SwissprotQ76EJ03e-64YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A0L9USV91e-103A0A0L9USV9_PHAAN; Uncharacterized protein
STRINGXP_007153487.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-57YABBY family protein