PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vradi0227s00040.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 117aa MW: 12541.2 Da PI: 4.5027

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0227s00040.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	57.8	3.1e-18	4	57	47	100
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k+lpe +r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e Vradi0227s00040.1 4 KELPEYQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAE 57 578999*******************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.176	1	58	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-16	4	55	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MTDKELPEYQ RSDAVSSMVY EANARVRDPV YGCVGAISSL QQQVDVLQTQ LALAQAEVVH 60 MKLSQVSTSS EQLKAVPATS NSSSENLSPS SKLAKTLFAM DMVVDQPNMG VSLWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-19	5	76	58	129	LOB family transfactor Ramosa2.1
5ly0_B	8e-19	5	76	58	129	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0227s00040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-180	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014490538.1	2e-75	LOB domain-containing protein 4
Refseq	XP_017406211.1	2e-75	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	7e-28	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A0L9T7V0	6e-74	A0A0L9T7V0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SAJ9	6e-74	A0A0S3SAJ9_PHAAN; Uncharacterized protein
TrEMBL	A0A1S3T9U5	6e-74	A0A1S3T9U5_VIGRR; LOB domain-containing protein 4
STRING	XP_007133379.1	1e-57	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-20	LOB domain-containing protein 4