PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0222s00030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 214aa    MW: 24004.1 Da    PI: 10.1341
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0222s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.93e-211261741259
                        EE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  12 qKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        qK+ kg+++pr+YYrC +a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Vradi0222s00030.1 126 QKMAKGNPCPRAYYRCIMAvGCPVRKQVQRCAEDKTILVTTYEGTHNHP 174
                        9*****************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.02E-18126176IPR003657WRKY domain
SMARTSM007741.2E-19126175IPR003657WRKY domain
PfamPF031061.7E-17126174IPR003657WRKY domain
PROSITE profilePS5081122.469126176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-21126176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MFPLLGFPVN LSRPAAKDDE NNRKVVGEVD FFSDRNSKPT SPPSQDQHIK SNIVKKEIVE  60
TPLHVNTVKL ISICFFIQLA QMQVELQRMN EENKKLIEML SHVTGNYMAR QMHLMTFMHQ  120
KTSAQQKMAK GNPCPRAYYR CIMAVGCPVR KQVQRCAEDK TILVTTYEGT HNHPLPPAAM  180
AMVSTTTAAA SMLLSRSMSN ADGIMNPKLV KKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-151261782576WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0222s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-84AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519067.11e-57probable WRKY transcription factor 31
RefseqXP_017434075.12e-57PREDICTED: probable WRKY transcription factor 31
TrEMBLA0A0L9VEC04e-56A0A0L9VEC0_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VLH23e-56A0A1S3VLH2_VIGRR; probable WRKY transcription factor 31
STRINGXP_007147706.13e-54(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.19e-33WRKY family protein