PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0214s00230.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 318aa    MW: 36546.1 Da    PI: 7.0099
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0214s00230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.89e-23151212159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dgy+WrKYGqK   ++++ r+YYrCt++   gCp+ k+v+r +e+p +  +tY g+Hn++
  Vradi0214s00230.1 151 MEDGYEWRKYGQKITMNAKYLRNYYRCTHKydeGCPAIKQVQRIQEEPPLYRTTYYGQHNCK 212
                        58***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-25136212IPR003657WRKY domain
PROSITE profilePS5081120.553146210IPR003657WRKY domain
SuperFamilySSF1182905.1E-23147212IPR003657WRKY domain
SMARTSM007742.4E-32151213IPR003657WRKY domain
PfamPF031066.2E-23152212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MKVTRTHNSG LQSVHPSITE MENLPSNGRK AIEEELIKGR DIANQLLEVL VLKSNTRHHA  60
DLEGSMLPFA EDLVRKVLCS FTNTLLLLNT DHCYSSNHAV IPILTKDAHF QNPDHIKDEP  120
CKSFFHPRKR RGCYKRKSSV PTWETNNSIL MEDGYEWRKY GQKITMNAKY LRNYYRCTHK  180
YDEGCPAIKQ VQRIQEEPPL YRTTYYGQHN CKGSLSTEIM FETASSSESP MFFSFSSPFQ  240
SKEQYQLHSS SVFQSAKQEP LEVIPDDDHV VHKQLHSSDY HLLCEYESDF NYSRHGTMLS  300
SAESVLLVNG NSLHFDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18151212869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0214s00230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521525.10.0probable WRKY transcription factor 70
TrEMBLA0A1S3VT920.0A0A1S3VT92_VIGRR; probable WRKY transcription factor 70
STRINGXP_007149559.11e-111(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-35WRKY DNA-binding protein 70