PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0214s00140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 285aa    MW: 32525.8 Da    PI: 7.2799
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0214s00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.51.1e-22135196159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dgy WrKYGqK  +++++ rsYYrCt++   gCp+ k+v+r +edp + ++tY g+H+++
  Vradi0214s00140.1 135 MEDGYVWRKYGQKITTNAKYLRSYYRCTHKhdkGCPAIKQVQRIQEDPPLYQTTYYGHHKCK 196
                        58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-24121197IPR003657WRKY domain
SuperFamilySSF1182902.22E-23128197IPR003657WRKY domain
PROSITE profilePS5081120.885130198IPR003657WRKY domain
SMARTSM007741.2E-31135197IPR003657WRKY domain
PfamPF031061.3E-22136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVNQPSTERR AMEEELVKGR DVANQLLEVC VHRSNTYQHH HEDVQGSMLP FIEDLVRKVL  60
CSFTNTLLLL NTDNDVSTEV PIPKTVKDVP SFSKCPNPQH TDEVCKGFFQ TKKPRGSYKR  120
KSSAPTWVTS SSILMEDGYV WRKYGQKITT NAKYLRSYYR CTHKHDKGCP AIKQVQRIQE  180
DPPLYQTTYY GHHKCKSSSS SDIVMESATP SGSSVFLSFS NTLPTKEQYQ LKSCFLSSST  240
KEEPVEVIQD ELLADHSPLA LSDYLLLCDY ELDFNYMRHV TTLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-17135196869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0214s00140.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423510.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0L9UK960.0A0A0L9UK96_PHAAN; Uncharacterized protein
STRINGXP_007149559.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-27WRKY DNA-binding protein 70