PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0209s00050.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 259aa MW: 28744.5 Da PI: 7.5167

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0209s00050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.7	9.3e-17	188	237	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+k+ +e++k+ Vradi0209s00050.1 188 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENEMLRKR-QEIEKM 237 79****************************************65.566665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.8E-15	178	231	No hit	No description
SMART	SM00338	3.3E-12	184	252	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.507	186	231	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.28E-23	188	233	No hit	No description
SuperFamily	SSF57959	3.06E-11	188	233	No hit	No description
Pfam	PF00170	6.9E-14	188	232	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGSQGGGKDS NGKQSQVQPL VRQNSMYSLT LDEVQNQLGD LGKPLSSMNI DELLKNVWTV 60 EAGQTAGMDN ESAAQAGQAA LQRQASLSLT GALSKKTVDE VWRDIQQNKA NEEKMFCDRQ 120 PTLGEMTLED FLGMAQPIHM GPGASLDVSF ADGQVAMPSP MMGTMSDSHT PGRKRTTPED 180 MMEKTVERRQ KRMIKNRESA ARSRARKQAY TNELENKVSR LEEENEMLRK RQEIEKMLPS 240 TPPPEPKYQL RRIGSAPF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0209s00050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007133528.1	1e-151	hypothetical protein PHAVU_011G186800g
Refseq	XP_007133529.1	1e-151	hypothetical protein PHAVU_011G186800g
Refseq	XP_007133530.1	1e-151	hypothetical protein PHAVU_011G186800g
Swissprot	Q9LES3	8e-87	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	V7AKW7	1e-150	V7AKW7_PHAVU; Uncharacterized protein
STRING	XP_007133528.1	1e-150	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-80	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]