PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 290aa MW: 32833.8 Da PI: 7.6811

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g14380.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.4e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +l + + ++G g+W++++ + g+ R +k+c++rw +yl Vradi01g14380.1 15 KGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	50.8	3.7e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++ E++ + ++++lG++ W+ Ia++++ gRt++++k++w++yl Vradi01g14380.1 68 RGVFSKHEEDTIMALHHMLGNK-WSQIAQRLP-GRTDNEIKNYWHSYL 113 899*****************.*****.**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-22	9	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.248	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	8.07E-28	13	109	IPR009057	Homeodomain-like
SMART	SM00717	6.2E-11	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-13	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	1.00E-9	18	62	No hit	No description
PROSITE profile	PS51294	24.669	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-25	66	117	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-14	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	1.39E-9	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEKQPLEKAK PKFRKGLWSP EEDNKLRNHI LKHGHGCWSS VPIKAGLQRN GKSCRLRWIN 60 YLRPGLKRGV FSKHEEDTIM ALHHMLGNKW SQIAQRLPGR TDNEIKNYWH SYLKKKVMKT 120 KEMESGKQIE HASSSSDTVE NSLSPQKLAT QDPSYALLQN MEKTATHSDN FFSQSYDFSK 180 EGCQSSLPKL LFSEWLSEDQ VNGAGSVNSD DSLVLGNVFD QNSSFQEAIM HLLEGNFGEE 240 YHNSLIHSST TEVYNSQLKP SNQVDGSDFI HCIPGNDLCS NFSLINRAM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-23	11	117	23	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g14380.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014509801.1	0.0	transcription factor LAF1-like
Swissprot	Q9M0K4	1e-58	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A1S3UUP8	0.0	A0A1S3UUP8_VIGRR; transcription factor LAF1-like
STRING	GLYMA16G31280.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3830	31	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	8e-62	myb domain protein 45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]