PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g12680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 132aa MW: 14566.6 Da PI: 7.4248 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 82.6 | 6.1e-26 | 6 | 103 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aC C+++ ++ ++C + +yfp++++++f+n+ +lFG +n+l+l++ +++++r+ +++s++ eA + +dP++Ga+g +l+l++q+++++ el Vradi01g12680.1 6 ACVLCRYQHKRHDASCQFGQYFPSNRASDFENACRLFGLANLLRLMRCAEPSQRQVMANSILTEASMFGNDPIHGALGQVLTLNNQIQSAEREL 99 69*******************************************************************************************9 PP DUF260 95 allk 98 + ++ Vradi01g12680.1 100 DFVN 103 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.108 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-25 | 6 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MSGHYACVLC RYQHKRHDAS CQFGQYFPSN RASDFENACR LFGLANLLRL MRCAEPSQRQ 60 VMANSILTEA SMFGNDPIHG ALGQVLTLNN QIQSAERELD FVNTMLAQCS LQSTSNVSNT 120 PLVTLLLHLS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-15 | 7 | 124 | 12 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-15 | 7 | 124 | 12 | 130 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g12680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-156 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027911404.1 | 2e-61 | LOB domain-containing protein 9-like | ||||
TrEMBL | A0A4D6LBU4 | 2e-59 | A0A4D6LBU4_VIGUN; Lateral organ boundary | ||||
STRING | XP_007133438.1 | 8e-52 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16300 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19820.1 | 1e-21 | LOB domain-containing protein 9 |