PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g11670.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 1064aa    MW: 119687 Da    PI: 5.5788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g11670.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-13102147248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Vradi01g11670.1 102 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 147
                      78*****************************.************986 PP
2Myb_DNA-binding32.71.8e-10154197248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Vradi01g11670.1 154 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 197
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.00896151IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-1899150IPR009057Homeodomain-like
SMARTSM007177.0E-15100149IPR001005SANT/Myb domain
CDDcd001675.67E-12104147No hitNo description
PfamPF139215.2E-13104164No hitNo description
SuperFamilySSF466899.77E-21127200IPR009057Homeodomain-like
CDDcd116598.56E-31149200No hitNo description
Gene3DG3DSA:1.10.10.603.5E-14151198IPR009057Homeodomain-like
SMARTSM007171.7E-12152199IPR001005SANT/Myb domain
PROSITE profilePS5129416.443152201IPR017930Myb domain
PfamPF118312.1E-61500748IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1064 aa     Download sequence    Send to blast
LCCHGRQYCI LFTFLTFCPS FFSQSQHKQR QNHTRYREER LFPPSAAVTL LRGDSATLLS  60
GKHSSEATLR LSSAANTPTA TFSTQVILSV VEAKMRIMIK GGVWKNTEDE ILKAAVMKYG  120
KNQWARISSL LVRKSAKQCK ARWYEWLDPS IKKTEWTREE DEKLLHLAKL MPTQWRTIAP  180
IVGRTPSQCL ERYEKLLDAA CVKDEXYEPG DDPRKLRPGE IDPNPESKPA RPDPVDMDED  240
EKEMLSEARA RLANTKGKKA KRKAREKQLE EARRLASLQK KRELKAAGID IRQRKRKRKG  300
IDYNAEIPFE KRPPPGFFDV ADEDRPVEQP KFPTTIEELE GKRRVDIEAQ LRKQDIAKNK  360
IAQRQDAPSA ILHANKLNDP ETVRKRSKLM LPPPQISDQE LDEIAKLGYA SDLAGSQELT  420
EGSGATRALL ANYAQTPGQG VTPLRTPQRT PSGKGDAIMM EAENLARLRE SQTPLLGGEN  480
PELHPSDFSG VTPKKKDIQT PNPMLTPSAT PGGAGLTPRV GMTPTRDGFS FSMTPKGTPL  540
RDELRINEDM NMHXSTKREL QRQADXRRSL RSGLGSLPQP KNEYQIVMEP VTEDAEEPEE  600
KIEEDMSDRI AREKAEEEAR QQALLRKRSK VLQRELPRPP AASLELIRNS LIRSDGDKSS  660
FVPPTSIEQA DEMIRKELLT LLEHDNAKYP LDDKVNKEKK KGVKRSTDLS AVPVIEDFEE  720
DEMKDADKLI KEEVQYLCAA MGHENEPLDE FIEAHRTCLN DLMYFPTRNA YGLSSVAGNM  780
EKLAALQNEF ENVRKKLDDD KEKMVRLEKK VTVITQGYEM RAKKSIWPQI EATFKQMDIA  840
ATELECFKAL QNQEQLAASH RINNLWSEVQ KQKELEKTLQ NRYGSLIEEL EKMQNIMNQC  900
RLKAEQQKEI EANNAHAETN ETKVNETDVQ DTGSVVPHSA EDGNAQAITV ESSHDGTSEQ  960
QVEIVQDQST SSPSHDMNVD SDNMHTIHDS DVKLANASPA AENVVEKVGG SGPTDGYTDN  1020
GENVSEMGAS MEINSPNQDV VANAVTTRES SVEETNAVTE ETN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.0968953800Cell division cycle 5-like protein
5xjc_L0.0968953800Cell division cycle 5-like protein
5yzg_L0.0968953800Cell division cycle 5-like protein
5z56_L0.0968953800Cell division cycle 5-like protein
5z57_L0.0968953800Cell division cycle 5-like protein
5z58_L0.0968953800Cell division cycle 5-like protein
6ff4_L0.0968953800Cell division cycle 5-like protein
6ff7_L0.0968953800Cell division cycle 5-like protein
6icz_L0.0968953800Cell division cycle 5-like protein
6id0_L0.0968953800Cell division cycle 5-like protein
6id1_L0.0968953800Cell division cycle 5-like protein
6qdv_O0.0968953800Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279298KKRELKAAGIDIRQRKRKRK
2293298RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g11670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512651.10.0cell division cycle 5-like protein
RefseqXP_022642277.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A1S3V2S50.0A0A1S3V2S5_VIGRR; cell division cycle 5-like protein
STRINGXP_007151972.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]