PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g11480.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 278aa    MW: 30145.3 Da    PI: 5.1622
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g11480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.3e-18183216134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  Vradi01g11480.1 183 CVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 216
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.0E-742271IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.82177213IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-17177227IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15181240No hitNo description
Gene3DG3DSA:3.30.50.103.1E-15181214IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.51E-15182229No hitNo description
PfamPF003203.5E-16183216IPR000679Zinc finger, GATA-type
PROSITE patternPS003440183208IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MIGNFIDDID CGSFFDHIDD LLEFPAEETA AVTDTTVVTP VAPPPTNFWS TESDSLHATN  60
TVFSGNTVPD LSTELSVPFE DIEQLEWLSN FVEDSFSGGS LTMQQEQPQC TNKEDTTHAQ  120
FQTASPHNTT SSKTSSDSEN FAESTVKPPK QASGEHKKKK KIKVTFSGGE DHNATASQAV  180
RKCVHCEITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE YRPAASPTFC AAVHSNSHKK  240
VLEMRNKTGP KSGFAADSAS SPELIPNTNS SLSLEYM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g11480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027925000.11e-139GATA transcription factor 8-like
RefseqXP_027925001.11e-139GATA transcription factor 8-like
TrEMBLA0A445GJ301e-131A0A445GJ30_GLYSO; GATA transcription factor
TrEMBLK7MHJ91e-131K7MHJ9_SOYBN; GATA transcription factor
STRINGGLYMA16G27171.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-47GATA transcription factor 9