PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g10680.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 233aa    MW: 26552.9 Da    PI: 9.6685
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g10680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.5e-32155213159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Vradi01g10680.1 155 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 213
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33140213IPR003657WRKY domain
SuperFamilySSF1182901.03E-28147214IPR003657WRKY domain
PROSITE profilePS5081129.356150215IPR003657WRKY domain
SMARTSM007749.8E-37155214IPR003657WRKY domain
PfamPF031063.5E-25156212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSTTSHTIGH HSLFEEQDQI PTQMGFFPFS SNLTLPPLGC HQSSLKAFNS ITTPSSLPIS  60
QQDSSTSNLT QTLFHKSREH LTSTFGGPQF LSLHRSTLNP WALGEVSECF SSKRSGFDDH  120
HHLGISAMKM KKMKARRKVR EPRFCFKTMS DVDVLDDGYK WRKYGQKVVK NTQHPRSYYR  180
CTQDNCRVKK RVERLAEDPR MVITTYEGRH VHSPSNDLED SSSPSQLGNF LW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-27146212874Probable WRKY transcription factor 4
2lex_A8e-27146212874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g10680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909140.0BT090914.1 Soybean clone JCVI-FLGm-5N5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507499.11e-175probable WRKY transcription factor 13
TrEMBLA0A1S3UNI21e-174A0A1S3UNI2_VIGRR; probable WRKY transcription factor 13
STRINGXP_007159778.11e-144(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.14e-54WRKY DNA-binding protein 13