PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g09200.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 278aa    MW: 30359.7 Da    PI: 8.2645
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g09200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.72.8e-314107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q
  Vradi01g09200.1   4 SCNGCRVLRKGCSEDCSIRPCLewiknPESQANATVFLAKFYGRAGLMNLINAGPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      +++e++l +e
  Vradi01g09200.1  98 AAVEAVLEGE 107
                      ***9988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381556.0E-931276IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.8323109IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLEWIKN PESQANATVF LAKFYGRAGL MNLINAGPQN  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLEGEPIT PITSEVAANG  120
RAPPLKACDI RHVSKDKNSA NRTQKAKTRI RVKRTGGDVL IKPKAPTVTR FVPVEAETNQ  180
TTSHESGLSH LSEAAAIVEG ESKESESVVS VETCNLFGET KTSDRFGETN DEIGLELRLG  240
FEPVSREHHM VPMKKRRIEV KSNCDLMELG LESSASK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g09200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508910.10.0LOB domain-containing protein 41
SwissprotQ9M8861e-103LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1S3USB80.0A0A1S3USB8_VIGRR; LOB domain-containing protein 41
STRINGXP_007151649.11e-176(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-98LOB domain-containing protein 41