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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g06990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 173aa MW: 19444.3 Da PI: 7.0079 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.1 | 2.4e-06 | 6 | 38 | 21 | 55 |
HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++Lr+llP ++K s ++ + +A++YI++Lq Vradi01g06990.1 6 NNLRSLLPLeY---IKGKRSTSDHVHEAMNYINHLQ 38 68*******77...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.975 | 1 | 37 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-5 | 4 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-8 | 4 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGKLCNNLRS LLPLEYIKGK RSTSDHVHEA MNYINHLQDK VKQLQEKRDA LLKVSNNLSS 60 IVPENESSCV THLPPLVFVH PFPGGIEIIC SHSFKKSVFP MSRLLDILHK EGLDVVNTTS 120 IRRNGRFIHT IQSEDPNHSN MVDTDYSELQ IKIMEALSSS SLQETLPVPE NC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g06990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-157 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510633.1 | 1e-124 | transcription factor bHLH118 | ||||
TrEMBL | A0A1S3UX48 | 1e-123 | A0A1S3UX48_VIGRR; transcription factor bHLH118 | ||||
STRING | XP_007152369.1 | 5e-96 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 8e-26 | bHLH family protein |