PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g05030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 832aa    MW: 94051.2 Da    PI: 8.4671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g05030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-10362406246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+eEd+ l+  v+ +G ++W  Ia+ +g+ Rt+ qc sr+q 
  Vradi01g05030.1 362 GAWTKEEDKSLLLIVQDMGIRNWFNIASSLGTSRTPFQCLSRFQR 406
                      79*****************************************96 PP
2Myb_DNA-binding34.35.3e-11416458346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd +l  av+ +G  +W  +a+ +  +Rt+ qc +rw k
  Vradi01g05030.1 416 EWTEEEDAQLCSAVTYFGDSNWQCVASVLE-RRTGTQCSNRWKK 458
                      7*****************************.***********98 PP
3Myb_DNA-binding40.85.2e-13465508146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eEd +l  av ++G + W+ Ia++++ gR   qc++r+++
  Vradi01g05030.1 465 KGSFTQEEDIRLTVAVMLFGRK-WNQIANYVP-GRIQSQCRDRYLN 508
                      799*****************99.*********.***********98 PP
4Myb_DNA-binding513.3e-16518559346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd++l+da++++G   W++Ia++++  Rt+ qc+ rw  
  Vradi01g05030.1 518 GWTEEEDLKLKDAIAKHGYC-WSKIAEELP-PRTDSQCRKRWKV 559
                      5*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.21259357IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-9263278IPR009057Homeodomain-like
PROSITE profilePS500905.587311355IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-9328367IPR009057Homeodomain-like
SuperFamilySSF466897.91E-17337405IPR009057Homeodomain-like
PROSITE profilePS500909.86356408IPR017877Myb-like domain
SMARTSM007173.9E-10360410IPR001005SANT/Myb domain
CDDcd001671.40E-7363408No hitNo description
PfamPF139211.1E-15364425No hitNo description
Gene3DG3DSA:1.10.10.601.6E-15368421IPR009057Homeodomain-like
PROSITE profilePS5129415.315409464IPR017930Myb domain
SuperFamilySSF466894.31E-22412506IPR009057Homeodomain-like
SMARTSM007179.7E-6413462IPR001005SANT/Myb domain
CDDcd001674.66E-8416460No hitNo description
Gene3DG3DSA:1.10.10.601.4E-16422471IPR009057Homeodomain-like
SMARTSM007172.7E-12464512IPR001005SANT/Myb domain
PfamPF002495.1E-12465508IPR001005SANT/Myb domain
PROSITE profilePS512949.821465510IPR017930Myb domain
CDDcd001672.39E-7467510No hitNo description
Gene3DG3DSA:1.10.10.601.0E-17472515IPR009057Homeodomain-like
SuperFamilySSF466891.2E-23490562IPR009057Homeodomain-like
PROSITE profilePS5129424.341511565IPR017930Myb domain
SMARTSM007172.4E-14515563IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-18516561IPR009057Homeodomain-like
PfamPF002498.2E-15518559IPR001005SANT/Myb domain
CDDcd001675.67E-14519560No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MTILGLHEGG IKKLVAEDQI SSLGCESDIA NGSTHYEPDG GELCPFSQNP MEAATQELIE  60
NIEMLLSDFV ESSEPDALES SRLQQIRLSF PPVVRCLVDA IRKNRDLKRF LERKKIEIEA  120
KTEENKKIRN NIKLLKGLQA ACTRSTGNVL SLKKDPLVQL ISAKRSPKKS KPLIRRINLQ  180
SLLLDLGIMP DLRLLAGNVA FVTLVLSKCQ LSLIILEILD PTFSWQKRRK VTSICYGPEE  240
NSRVANYRMV LERFPLSLER KKWSKADSGN LFKGIKQQFQ EMVLQLSLSL DGTSSEGLRG  300
NAVDMDNIIA SIEDLEVTPE MIRNFLPKVN WDLIASMYVG GHTGSECESR WLNYEDPLVN  360
QGAWTKEEDK SLLLIVQDMG IRNWFNIASS LGTSRTPFQC LSRFQRSLNP SMLNSEWTEE  420
EDAQLCSAVT YFGDSNWQCV ASVLERRTGT QCSNRWKKSL CPEKKGSFTQ EEDIRLTVAV  480
MLFGRKWNQI ANYVPGRIQS QCRDRYLNSL DPSLKWGGWT EEEDLKLKDA IAKHGYCWSK  540
IAEELPPRTD SQCRKRWKVL CPEQVPLLQE AKKKQRSIIG SNFVDRESER PTITLTDFLP  600
LLALAPKSDV GSSNIRKKHK SSNVSKKKSS KKGAKRTKRT KEVVDTEVYH DDEFYSVSAH  660
SDLPQKKMRS KRRTKSSRNS PQELVDISCS DKVPCIEGSE NQSTCVTNFE NQDSDSITLA  720
CFLRNKSNET LSRFTKNLSQ TSFAGIITDV PEQVESQNPS DDQGGSVLLN EEHSASNPTI  780
ISDDSGPSMS KHVGSVAKPT HIIVEEKNDE LFPPLTQCRP RRERKRPFRY L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-293305577155MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-293305577155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818823RPRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g05030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027924564.10.0uncharacterized protein LOC114182022
TrEMBLA0A4D6LTC70.0A0A4D6LTC7_VIGUN; Myb proto-oncogene protein
STRINGXP_007152696.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-153myb domain protein 4r1