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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g04570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25103.8 Da PI: 9.0494 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.7 | 2.6e-26 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlrr+C++dC++++ + p++q++++ +++k++G++ +l+ll ++p + ++++++sl+yeA+ r+ +P+ G++g++++++++l++ Vradi01g04570.1 4 SCNGCRVLRRGCTADCPIRRSLqwiscPHSQSNATLFLAKFYGRQGLLNLLINAPSHLQPAVFKSLLYEACGRMVNPIFGSTGLLSTGNWHLCE 97 6********************************************************************************************* PP DUF260 90 lkaelallk 98 ++a+++l + Vradi01g04570.1 98 AAAKAVLCG 106 **9998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.349 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-21 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRFSCNGCRV LRRGCTADCP IRRSLQWISC PHSQSNATLF LAKFYGRQGL LNLLINAPSH 60 LQPAVFKSLL YEACGRMVNP IFGSTGLLST GNWHLCEAAA KAVLCGAPIQ QALLDGVESL 120 DFKACDIRHV ARSHKSYGPG ALKVVKSGTS KFKRRAAKPK VESTVAELGE SELFGQRSLS 180 QDSASGLTRT SENKIIGGEA DSSCSENVVV PARANGEEIE LLLTLGWGPL KNQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g04570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014517407.1 | 1e-172 | LOB domain-containing protein 40 | ||||
TrEMBL | A0A1S3VGS2 | 1e-171 | A0A1S3VGS2_VIGRR; LOB domain-containing protein 40 | ||||
STRING | GLYMA07G10180.1 | 1e-120 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18189 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-58 | LOB domain-containing protein 41 |