PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g03990.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CPP
Protein Properties Length: 596aa    MW: 64040.6 Da    PI: 7.5117
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g03990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.81.2e-1492131242
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ e+
  Vradi01g03990.1  92 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVEN 131
                      89**************************.********9875 PP
2TCR50.93.1e-16176215140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Vradi01g03990.1 176 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 215
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-1791131IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.00392216IPR005172CRC domain
PfamPF036383.0E-1193128IPR005172CRC domain
SMARTSM011148.4E-20176217IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12179214IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MGEGEGGDIA PKNALSSEVV PPAVTSTAAL EVPAKKLARQ LDFTGAPEHP QQQPVAVLPL  60
PPQAPHSRIG KPESPKSRSR PNFEMKDATP KKQKQCNCKH SKCLKLYCEC FASGIYCDGC  120
NCVNCFNNVE NEAARREAVE ATLERNPNAF RPKIASSPHG TRDSREEAGE VLILGKHNKG  180
CHCKKSGCLK KYCECFQANI LCSENCKCMD CKNFEGSEER QALFHGDQNN MAYIQQAANA  240
AITGAIGSSG YSSPPVSKKR KGQELFFWPT AKDPSISKLG QQVNHVRGPA PSSSLSPVSG  300
ARVGTATLGP SKFMYRSLLA DIIQPQHLKE LCSVLVLVSG QAAMTLSDQK ILTEKHAEDQ  360
TETSLASSSQ ERLPPSQKEG HVEKTVADDC SSANQTDKIS PDDSSSDGAD VPKGRPMSPG  420
TLALMCDEQD TMFMTAASPI GPMAHACNTS SQFPYGQGMT EVYAEQERIV LTKFRDFLNR  480
VITMGEINGK LILSSFQISD ATSLTLHIGG LTLVLNTLLY ETKCSSLARN ELENQKDPII  540
NGVGNANSVI VRQHAASSNG VTKPSVSPLA TTSTRMIPGN ISENGEAKVK IEKDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-32842252132Protein lin-54 homolog
5fd3_B4e-32842252132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g03990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518104.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S3VJ200.0A0A1S3VJ20_VIGRR; protein tesmin/TSO1-like CXC 5 isoform X1
STRINGXP_007152845.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-169Tesmin/TSO1-like CXC domain-containing protein