PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g03830.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 319aa    MW: 34489.7 Da    PI: 7.3836
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g03830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000361992371255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Vradi01g03830.1 199 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 237
                      6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.56187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-6197241No hitNo description
SuperFamilySSF474594.06E-10197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-7201243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MHRAVLQSSP VQQMMAAGNP NWWNININTM PPQAPPFFSS PSNFPIPYAP TSLPFPSWNE  60
NQDLPESWSQ LLMSGVVDEQ GKVGMGQFQT KKLENWEDQM LGQPPNASLV DVKQENSVNS  120
YVYGHGNEEL QSSKPSWSPK SCATSFSSNM LDFSNSSSTD ARLPPPDRAS ECNSTAAGGA  180
LKKARVQPSA TTQATFKVRK EKLGDRITAL HQLVSPFGKT DTASVLLEAI GYIRFLQSQI  240
EALSLPYLSG GPVSGRQQNS LLNNENGLKR KAAGEPDTEE KKGLRSRGLC LVPVSCTLQV  300
GSDNGADYWA PALGGGFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g03830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938720.0BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517608.10.0transcription factor bHLH68-like
SwissprotQ8S3D12e-81BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A1S3VGW60.0A0A1S3VGW6_VIGRR; transcription factor bHLH68-like
STRINGXP_007152861.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]