PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g03740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 1176aa MW: 130818 Da PI: 4.6707 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.9 | 5.6e-11 | 107 | 165 | 27 | 83 |
---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS B3 27 ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFk 83 +++ +++++++++d+ g ++e+ l+ + + yvl +GW +F++++gL +gD v ++ Vradi01g03740.1 107 EEDVRKGIEVKVYDRGGHEFEMMLKKwvIDSN-QfYVLNRGWFSFCNEHGLGQGDLVALR 165 34446899****************66343444.35*********************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.63E-11 | 99 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-10 | 101 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-8 | 110 | 166 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.55E-10 | 111 | 165 | No hit | No description |
PROSITE profile | PS50863 | 8.557 | 115 | 187 | IPR003340 | B3 DNA binding domain |
SMART | SM00332 | 2.8E-52 | 229 | 517 | IPR001932 | PPM-type phosphatase domain |
SuperFamily | SSF81606 | 1.83E-48 | 239 | 384 | IPR001932 | PPM-type phosphatase domain |
PROSITE profile | PS51746 | 39.577 | 250 | 519 | IPR001932 | PPM-type phosphatase domain |
Gene3D | G3DSA:3.60.40.10 | 6.4E-64 | 252 | 520 | IPR001932 | PPM-type phosphatase domain |
Pfam | PF00481 | 1.2E-33 | 258 | 498 | IPR001932 | PPM-type phosphatase domain |
CDD | cd00143 | 5.76E-52 | 260 | 519 | No hit | No description |
PROSITE pattern | PS01032 | 0 | 265 | 273 | IPR000222 | PPM-type phosphatase, divalent cation binding |
SuperFamily | SSF81606 | 1.83E-48 | 416 | 521 | IPR001932 | PPM-type phosphatase domain |
Gene3D | G3DSA:2.60.120.10 | 3.1E-30 | 562 | 687 | IPR014710 | RmlC-like jelly roll fold |
SuperFamily | SSF51206 | 2.23E-26 | 563 | 686 | IPR018490 | Cyclic nucleotide-binding-like |
PROSITE profile | PS50042 | 26.86 | 576 | 685 | IPR000595 | Cyclic nucleotide-binding domain |
CDD | cd00038 | 5.27E-21 | 576 | 685 | No hit | No description |
SMART | SM00100 | 1.0E-12 | 576 | 699 | IPR000595 | Cyclic nucleotide-binding domain |
Pfam | PF00027 | 3.7E-20 | 595 | 686 | IPR000595 | Cyclic nucleotide-binding domain |
PRINTS | PR00103 | 1.1E-7 | 597 | 611 | No hit | No description |
PRINTS | PR00103 | 1.1E-7 | 612 | 626 | No hit | No description |
PRINTS | PR00103 | 1.1E-7 | 647 | 656 | No hit | No description |
SuperFamily | SSF51206 | 9.45E-15 | 693 | 752 | IPR018490 | Cyclic nucleotide-binding-like |
Gene3D | G3DSA:2.60.120.10 | 3.2E-16 | 694 | 831 | IPR014710 | RmlC-like jelly roll fold |
SMART | SM00100 | 7.1E-5 | 702 | 840 | IPR000595 | Cyclic nucleotide-binding domain |
CDD | cd00038 | 1.02E-8 | 702 | 826 | No hit | No description |
PROSITE profile | PS50042 | 12.038 | 702 | 842 | IPR000595 | Cyclic nucleotide-binding domain |
SuperFamily | SSF51206 | 9.45E-15 | 779 | 837 | IPR018490 | Cyclic nucleotide-binding-like |
PRINTS | PR00103 | 1.1E-7 | 821 | 833 | No hit | No description |
SuperFamily | SSF56112 | 3.03E-42 | 848 | 1148 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 7.9E-8 | 856 | 969 | No hit | No description |
PROSITE profile | PS50011 | 25.701 | 863 | 1117 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 1.2E-17 | 871 | 1117 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 4.1E-32 | 883 | 1117 | IPR000719 | Protein kinase domain |
Gene3D | G3DSA:1.10.510.10 | 3.5E-40 | 970 | 1139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0043169 | Molecular Function | cation binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1176 aa Download sequence Send to blast |
MAGSSSNSGR AKSVVEGNKH AKEIQFNDEL HLEFILDAGI VKDCELSLPY GVQLTNDRWN 60 LFLPLLGFEE TLIGFLKEEE DVRKGIEVKV YDKGGHEFEM MLLKEEEEDV RKGIEVKVYD 120 RGGHEFEMML KKWVIDSNQF YVLNRGWFSF CNEHGLGQGD LVALRAFRHS ITDIINGDPV 180 VRTTDVGELA NFSPTSSDVE EGEIRDQLNQ LSITRDSEAG IRRLARVSAQ FLPPDGSRIV 240 KVPSGNFELR YSFLSQRGTS PNDHFFGVFD GHGEFGAQCS QFVKRKLCEN LLRNSKFRGD 300 PVEACHAAFL ATNSQLHADV LDDSMSGTTA ITVLVRGRTI FVANSGDSRA VIAERRGKEI 360 VAVDLSIDQT PFRSDELERV KLCGARVLTL DQIEGLKNPD VQCWGTEEGD DGDPPRLWVP 420 NGMYPGTAFT RSIGDSIAET IGVVANPEIV VFELTQDHPF FVLASDGVFE FLSSQSVVEM 480 AAKFKDPRDA CAAIVAESYR LWLQYETRTD DITVIIVHVN GLTESTVAQS ASYGDVLQKP 540 VPQVVEVTGS ESPSTFGWSA RNQRAHIEQA LHDHFLFRKL TDSQCHVLLD CMQRVEVEPG 600 DIIVKQGGEG DCFYVVGSGE FEVLATQEEK EGDVPRVLQR YTAEKLSCFG ELALMYNKPL 660 QASVRAVTKG TLWALKREDF RGILMSEFSN LSSLKLLRSV DLLSRLSILQ LSQISDSLSE 720 VSFSNGQTII DNNEILALYI IQKGCVKITF DSDLLTSPNA YSLKPDIQNE EEDVQSRTEL 780 SIEKPEGSYF GEWTLYGERI GSINAVAVGD VVCALLTKDK FESVIGSIQK ISQEDHKSKD 840 NSMELTGRNY DFSSLDKVQL SDLEWRKTLY STDCSEIGVA NLKESENLLT LKRFSKPKIK 900 RLGKESQVLK EKDLIKGLGS SASIPQVLCT CADSMYAGIL LNTHLACPLS SILSSPLSES 960 AARFCAASVV TALEDLHKNG VLYRGVSPDV LMLEQTGQIQ LVDFRFGKQL SGERTFTICG 1020 MADSLAPEIV LGKGHGFPAD WWALGVLIYF MLRGEMPFGS WRENELDTVA KIAKRKLHLP 1080 ESFSSETVDL ISKLLEVEEN NRLGSQGPDS VKSHPWFKGI DWEGIRSRTF PVPQEIISRI 1140 TQYLEVHSED CSTGYPGSPL QEVEELNVPE WLEDW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rdq_E | 7e-41 | 848 | 1133 | 28 | 313 | cAMP-dependent protein kinase, alpha-catalytic subunit |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g03740.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439799.1 | 0.0 | PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 | ||||
Swissprot | Q9SL76 | 0.0 | P2C19_ARATH; Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein | ||||
TrEMBL | A0A4D6LVL4 | 0.0 | A0A4D6LVL4_VIGUN; Protein kinase A | ||||
STRING | XP_007152897.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10863 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12020.2 | 6e-10 | WRKY family protein |
Publications ? help Back to Top | |||
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