PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g03030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 979aa    MW: 107817 Da    PI: 6.7015
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g03030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51.1e-2283184199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  Vradi01g03030.1  83 FCKQLTASDTSTHGGFSVPRRAAEKIfphldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 173
                      99*****************************9545444.38************************************************..568 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l+++++r+
  Vradi01g03030.1 174 KQQLLLGIRRA 184
                      8889****997 PP
2Auxin_resp120.41.4e-39209292183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+v+YnPras+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Vradi01g03030.1 209 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 292
                      79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-4273212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-4075198IPR015300DNA-binding pseudobarrel domain
CDDcd100173.70E-1882174No hitNo description
PROSITE profilePS5086311.84383185IPR003340B3 DNA binding domain
PfamPF023621.9E-2083184IPR003340B3 DNA binding domain
SMARTSM010199.1E-2283185IPR003340B3 DNA binding domain
PfamPF065072.4E-34209292IPR010525Auxin response factor
PROSITE profilePS5174519.007864950IPR000270PB1 domain
SuperFamilySSF542779.61E-6887944No hitNo description
PfamPF023092.8E-6914951IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 979 aa     Download sequence    Send to blast
MKTHPPQTDG GSAAPNPNPN PSQESRSINP ELWQACAGPL VNLPPSATHV IYFPQGHSEQ  60
FDKDALLRSD LALKSTKPQP DFFCKQLTAS DTSTHGGFSV PRRAAEKIFP HLDYSMQPPA  120
QELVARDLHD NVWTFRHIYR GQPKRHLLTT GWSLFVSGKR LFAGDSVLFI RDEKQQLLLG  180
IRRANRQPTN ISSSVLSSDS MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPLAKYY  240
KSVYSHQPSL GMRFRMMFET EDSGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESTA  300
GEKRSRVSIW EIEPVTAPFF LCPPPFFRSK RPRQPGMPDD DLSDFDNIFK RTMPWLGDDM  360
CMKDPQGLPG LSLAQWMNVQ QHPALAGSLQ PNFAPSLPGS ILQNIPGADI SRQLGFSAPQ  420
ISQSNNVAFN THRLLQTAQQ LDQLQKLPST SSTLGAVLPP QQQLGDITQQ SRQNLANQTI  480
PQSQVQAQLL HPQNIVQTNN ILQQQQPSIQ NHQMHRSLSQ NPSQQQTIIG QSQQQNLIQS  540
PIPDHVQQLQ MSDNQIQLHL LQKLQQQKQT HLAQQTVLQQ PTQLTQIQDQ QRQILDKTHN  600
LPRALTSGQV LEIPPMLQNS LPEANSISNQ ITKANFQNSI QFPQQSKLQQ QQPGLLSEMS  660
GHMGLLPTPT TNNQLSAGGS SILNGAAGAG QSVITDDIPS CSTSPSANNC ASALPPLINS  720
RLQRNTIVGD DMAQSASTIL SSSALETMSS NANLLKDIQP KSEVKPSLNI SKSQNQGHFG  780
LQSYLNGSAV HTDCLDTSSS TTSVCLSQSD AHMNQNNNPL AYNPHPMLFR DNSQDGEVQA  840
DARGNIPYAN NIDSQMGMPL NPDSLLTKGT LGLGKDLSNN FSSEALLGYE ELKQDLARRF  900
GIEGQLEDRQ RIGWKLVYVD HESDVLLVGD DPWEEFVNCV RCIKILSPQE VQQMSLDGDF  960
GNGGLPNQAC SSSDGGNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1302831351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g03030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511826.10.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A1S3V0G20.0A0A1S3V0G2_VIGRR; Auxin response factor
STRINGXP_007152995.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19