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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g03030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARF | ||||||||
Protein Properties | Length: 979aa MW: 107817 Da PI: 6.7015 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.5 | 1.1e-22 | 83 | 184 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ Vradi01g03030.1 83 FCKQLTASDTSTHGGFSVPRRAAEKIfphldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 173 99*****************************9545444.38************************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ Vradi01g03030.1 174 KQQLLLGIRRA 184 8889****997 PP | |||||||
2 | Auxin_resp | 120.4 | 1.4e-39 | 209 | 292 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+ Vradi01g03030.1 209 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 292 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-42 | 73 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-40 | 75 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.70E-18 | 82 | 174 | No hit | No description |
PROSITE profile | PS50863 | 11.843 | 83 | 185 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-20 | 83 | 184 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.1E-22 | 83 | 185 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-34 | 209 | 292 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.007 | 864 | 950 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.61E-6 | 887 | 944 | No hit | No description |
Pfam | PF02309 | 2.8E-6 | 914 | 951 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 979 aa Download sequence Send to blast |
MKTHPPQTDG GSAAPNPNPN PSQESRSINP ELWQACAGPL VNLPPSATHV IYFPQGHSEQ 60 FDKDALLRSD LALKSTKPQP DFFCKQLTAS DTSTHGGFSV PRRAAEKIFP HLDYSMQPPA 120 QELVARDLHD NVWTFRHIYR GQPKRHLLTT GWSLFVSGKR LFAGDSVLFI RDEKQQLLLG 180 IRRANRQPTN ISSSVLSSDS MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPLAKYY 240 KSVYSHQPSL GMRFRMMFET EDSGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESTA 300 GEKRSRVSIW EIEPVTAPFF LCPPPFFRSK RPRQPGMPDD DLSDFDNIFK RTMPWLGDDM 360 CMKDPQGLPG LSLAQWMNVQ QHPALAGSLQ PNFAPSLPGS ILQNIPGADI SRQLGFSAPQ 420 ISQSNNVAFN THRLLQTAQQ LDQLQKLPST SSTLGAVLPP QQQLGDITQQ SRQNLANQTI 480 PQSQVQAQLL HPQNIVQTNN ILQQQQPSIQ NHQMHRSLSQ NPSQQQTIIG QSQQQNLIQS 540 PIPDHVQQLQ MSDNQIQLHL LQKLQQQKQT HLAQQTVLQQ PTQLTQIQDQ QRQILDKTHN 600 LPRALTSGQV LEIPPMLQNS LPEANSISNQ ITKANFQNSI QFPQQSKLQQ QQPGLLSEMS 660 GHMGLLPTPT TNNQLSAGGS SILNGAAGAG QSVITDDIPS CSTSPSANNC ASALPPLINS 720 RLQRNTIVGD DMAQSASTIL SSSALETMSS NANLLKDIQP KSEVKPSLNI SKSQNQGHFG 780 LQSYLNGSAV HTDCLDTSSS TTSVCLSQSD AHMNQNNNPL AYNPHPMLFR DNSQDGEVQA 840 DARGNIPYAN NIDSQMGMPL NPDSLLTKGT LGLGKDLSNN FSSEALLGYE ELKQDLARRF 900 GIEGQLEDRQ RIGWKLVYVD HESDVLLVGD DPWEEFVNCV RCIKILSPQE VQQMSLDGDF 960 GNGGLPNQAC SSSDGGNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-130 | 28 | 313 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g03030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511826.1 | 0.0 | auxin response factor 19 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A1S3V0G2 | 0.0 | A0A1S3V0G2_VIGRR; Auxin response factor | ||||
STRING | XP_007152995.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6823 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |