PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MIKC_MADS

Protein Properties

Length: 193aa MW: 21689.5 Da PI: 5.7883

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0190s00290.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.1	2.7e-24	9	54	6	51
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++ rqvtfskRr+g+ KKA+E+SvLCda+va+i+f +gkl+eyss Vradi0190s00290.1 9 TTSRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNAKGKLFEYSS 54 689*****************************************96 PP
2	K-box	78	2.4e-26	87	160	16	89
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +++ + kL ++e L++++R+++G+dL++Lsl+eLq+Le+qL++++k+iR++Kn+++ e+i++lqkk + ++ Vradi0190s00290.1 87 NWSLQCFKLTGKVEVLEKNLRNFVGQDLDPLSLRELQSLEHQLDTAIKRIRTRKNQVMNESISDLQKKVRGENS 160 7888999*************************************************************986555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.932	7	56	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-22	8	64	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.7E-20	9	55	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-21	10	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-16	18	33	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-16	33	54	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	13.447	85	172	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.8E-21	87	156	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
SACVEADPTT SRQVTFSKRR TGLRKKAHEI SVLCDAQVAL IVFNAKGKLF EYSSESRYPS 60 NDLEELQQED LELKTTYGPF DNLLTGNWSL QCFKLTGKVE VLEKNLRNFV GQDLDPLSLR 120 ELQSLEHQLD TAIKRIRTRK NQVMNESISD LQKKVRGENS EAVGAVEEMD EGGAVPSTTT 180 LIPSWMLHQF AR*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0190s00290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-59	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014522860.1	1e-93	truncated transcription factor CAULIFLOWER A-like
Refseq	XP_022632265.1	1e-93	truncated transcription factor CAULIFLOWER A-like
Swissprot	D7SMN6	4e-59	FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBL	A0A1S3VX21	3e-92	A0A1S3VX21_VIGRR; truncated transcription factor CAULIFLOWER A-like
STRING	GLYMA13G06811.1	2e-73	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF588	32	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	2e-52	AGAMOUS-like 8

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]