PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0183s00040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 349aa    MW: 38778.3 Da    PI: 5.9125
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0183s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.2e-28129190159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYGqK++ g+ +pr+YYrCt++   gC+++k+v+rs+edp+++ei Y+g+H+++
  Vradi0183s00040.1 129 LDDGHSWRKYGQKDILGAMYPRGYYRCTHRtvqGCMATKQVQRSDEDPTIFEINYRGNHTCT 190
                        59***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.905124192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-28125190IPR003657WRKY domain
SuperFamilySSF1182903.4E-25128190IPR003657WRKY domain
SMARTSM007748.7E-40129191IPR003657WRKY domain
PfamPF031064.3E-26130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDNMGDPNTI IQELLQGLEL ARQLQLHLHT PSSSHETRDL LIHNIISIFE KALQMVNWKA  60
PVPAGESSQL PLPPAIRMSD SPISSSPQSE DSERDLKDQD HNAFKKRNTL PRWTKKIRVT  120
PGMGVEGPLD DGHSWRKYGQ KDILGAMYPR GYYRCTHRTV QGCMATKQVQ RSDEDPTIFE  180
INYRGNHTCT VAHSAATSSI IPLENQEPNQ QQNILQSLEQ QPNDLLLSLR EGLRVQTQNL  240
DSTDPSFSPF RFPLSTNIKN EGQVFPPHVL ENFSSPYISP ATSGITHFSV SPTGVNNFGG  300
NQNLATFESH INDIIPAVTS APNSEAVALE FPFDPFGFDG QNLRFGNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20129189868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0183s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522380.10.0probable WRKY transcription factor 53
TrEMBLA0A1S3VVP10.0A0A1S3VVP1_VIGRR; probable WRKY transcription factor 53
STRINGXP_007137568.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.19e-48WRKY family protein