PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0180s00180.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 280aa    MW: 30146.9 Da    PI: 6.8342
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0180s00180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.63.1e-17169202132
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                        C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ 
  Vradi0180s00180.1 169 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWAN 202
                        ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.4E-673103IPR010399Tify domain
PfamPF062009.8E-77496IPR010399Tify domain
PROSITE profilePS510178.78137179IPR010402CCT domain
PfamPF062034.5E-10137168IPR010402CCT domain
SuperFamilySSF577169.98E-11162205No hitNo description
PROSITE profilePS501149.117163199IPR000679Zinc finger, GATA-type
SMARTSM004014.2E-11163230IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14168203IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.20E-13168203No hitNo description
PROSITE patternPS003440169196IPR000679Zinc finger, GATA-type
PfamPF003206.4E-15169202IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEPPAMYGHS QPLNMPPQIS AAESGNGSGP DSALDTHHHI HYETHGLEDG AAGAMVVVED  60
VTSDAVYVSG AGGPEESSQL TLSFRGQVYV FDAVQAVLLL LGGCELSSSG SPCVDAVPQQ  120
NQRGSMEYPA RCSLPQRAAS LDRFRKKRKE RCFDKKVRYG VRQEVALRCT HCGTSSKSTP  180
MMRRGPSGPR SLCNACGLFW ANRVVVGVPP FDDVIVQGAL RDLSKRNHEQ SLVPVDDGNV  240
SDCRTAVNPA HNNLAAYSEH DNPALVADRK VFQSQKMLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149RKKRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0180s00180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-105AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522427.10.0GATA transcription factor 25 isoform X2
SwissprotQ9LRH63e-61GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1S3VW670.0A0A1S3VW67_VIGRR; GATA transcription factor 25 isoform X2
STRINGXP_007141281.11e-167(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-58GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]