PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0169s00230.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 287aa    MW: 32163.3 Da    PI: 6.3419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0169s00230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.8e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lv+ ++++G  +W++ ++  g++R++k+c++rw +yl
  Vradi0169s00230.1 14 KGPWTPEEDQKLVNHIQKYGHASWRALPKLAGLNRCGKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding57.23.7e-1867112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE++ ++d+++ lG++ W++Ia++++ gRt++++k++w+++l
  Vradi0169s00230.1  67 RGKFSKEEEQTILDLHAILGNK-WSAIASHIP-GRTDNEIKNFWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.939961IPR017930Myb domain
SuperFamilySSF466892.62E-3111108IPR009057Homeodomain-like
SMARTSM007171.3E-141363IPR001005SANT/Myb domain
PfamPF002491.9E-161461IPR001005SANT/Myb domain
CDDcd001674.57E-111661No hitNo description
PROSITE profilePS5129426.6662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2765117IPR009057Homeodomain-like
SMARTSM007172.5E-1766114IPR001005SANT/Myb domain
PfamPF002496.7E-1767112IPR001005SANT/Myb domain
CDDcd001672.14E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRSPCCDES GLKKGPWTPE EDQKLVNHIQ KYGHASWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SKEEEQTILD LHAILGNKWS AIASHIPGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHQPRT DDILTGLSHL IVLANLKELL DHHQWEQSLA RLQEEAIQLT NLQSLQQDLV  180
QPQFTEADLN TVSSTTNSTF MMNNDIVNVS NDSSVSSSNA IGSVQLANDS TPFSPWLFSC  240
SSTTPSSPST HVVQPVTSEV SLTNVDDNCT IWPEILLEDP LFKMIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
1h8a_C3e-301211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0169s00230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523541.10.0transcription factor MYB16-like
SwissprotQ9S9Z25e-94MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A1S3VYX20.0A0A1S3VYX2_VIGRR; transcription factor MYB16-like
STRINGXP_007153451.11e-157(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-95myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]