PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0169s00120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 343aa    MW: 37734.9 Da    PI: 4.3363
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0169s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.48.4e-09108128222
                AP2   2 gykGVrwdkkrgrWvAeIrd.p 22 
                        +ykGVr +k +g+W+AeIrd +
  Vradi0169s00120.1 108 KYKGVRMRK-WGKWAAEIRDpF 128
                        8******99.**********44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0021108152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-8108129IPR001471AP2/ERF domain
PROSITE profilePS5103210.771108221IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-5108129IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MLEALNQSAK TMKKLKQKRN PFHDSKMTRK LRIICDDPDA TDSSSDEEEH FGNCRKVKRT  60
MVEIALPPVP VNSLIAAETS TESSNNEELN KKRVLAKTPS VKRQTCGKYK GVRMRKWGKW  120
AAEIRDPFKD AAESATDSKS ATIDYSESSI LSHTSPYSVL ELDTSASNLT VSGKVSGNEV  180
VETKGLETEV AEIETEGLKA ESFEAEFAEL DIPDLSMLSV PHPSAVAANA ANVANVGAPS  240
EFEFDWFALD SLEHGFDDDL AALEDIQIYG FDDGQPSELP DYDFDDIGAD EFAGFQNCKG  300
ENYLPVPRRD FYELVETLLL CLEVHGGKMN SCDDMVEDKH GG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0169s00120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426447.11e-101PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_017426448.11e-101PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_017426449.11e-101PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A0L9UT791e-100A0A0L9UT79_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T2G61e-100A0A0S3T2G6_PHAAN; Uncharacterized protein
STRINGGLYMA08G30716.22e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-27ERF family protein