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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0169s00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CO-like | ||||||||
Protein Properties | Length: 371aa MW: 42031.8 Da PI: 9.3787 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.5 | 3.2e-09 | 16 | 59 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + ++++q++C ++ +lC+ C ++ H+ H+v Vradi0169s00070.1 16 ARACDSCIRNRAQWYCAADDAFLCQACDSSVHSAnplarrhHRV 59 578*****************************668888886655 PP | |||||||
2 | CCT | 64.6 | 2.9e-22 | 313 | 356 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKr++R+F+Kk+rYe+RK +Ae+RpR+KGrFvk++ Vradi0169s00070.1 313 REARVLRYREKRRKRLFSKKVRYEVRKMNAEKRPRMKGRFVKRS 356 9****************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.637 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-9 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.7E-7 | 16 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.80E-9 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.013 | 313 | 355 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.1E-17 | 313 | 355 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MSSNKNKGKT VGAKTARACD SCIRNRAQWY CAADDAFLCQ ACDSSVHSAN PLARRHHRVR 60 LKIISRINSN NDLSSGMSNI RVPSWYKGFT KKPRTPRHRR HDNKGVKSPF NVVPEVCPQD 120 TISNSHEEST DQLLYRVPAT PSSEQGISMT DERKVDLLGC ESAIEIAEFS ADVESLLGKG 180 LESEFVGMEE LGLVGAKDVE EHASWESCVD NENVSLTYEE AKDKVVALDK NQQVLRENYR 240 LKKKILLLQL DYEAVISAWT SQKSPWTTAD KPDLGTQQFW PHCMGTCGVE FYHPRGELGE 300 LSVCHSTMAD DGREARVLRY REKRRKRLFS KKVRYEVRKM NAEKRPRMKG RFVKRSCIVT 360 PPTVPLLNRK * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0169s00070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014523547.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A1S3VZ82 | 0.0 | A0A1S3VZ82_VIGRR; zinc finger protein CONSTANS-LIKE 16 | ||||
STRING | XP_007153446.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 6e-72 | B-box type zinc finger protein with CCT domain |