PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0158s00480.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 527aa    MW: 58010.3 Da    PI: 7.1582
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0158s00480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-33206263260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Vradi0158s00480.1 206 DDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSL-DGQITEIVYKGSHNHPK 263
                        8****************************************.***************85 PP
2WRKY106.11.8e-33364422159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Vradi0158s00480.1 364 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCPVRKHVERASHDLRAVITTYEGKHNHD 422
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-28200264IPR003657WRKY domain
SuperFamilySSF1182902.75E-25204264IPR003657WRKY domain
SMARTSM007746.0E-36205263IPR003657WRKY domain
PfamPF031062.1E-25206262IPR003657WRKY domain
PROSITE profilePS5081123.824206264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37349424IPR003657WRKY domain
SuperFamilySSF1182902.22E-29356424IPR003657WRKY domain
PROSITE profilePS5081138.067359424IPR003657WRKY domain
SMARTSM007744.3E-39364423IPR003657WRKY domain
PfamPF031068.2E-26365422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MTTSFSDLLS SPTDRNSERP QELSDQTGSA VPKFKSTPPP SLPISHPQNH PLPPISPSYF  60
NIPHGLSLAE LLDSPVLLHS SNVLPSPTTG SYAGQGFNWK SSYGENQHHV KEEDKSFSSF  120
SFQTQTQTQI PLTSSTGFQS SNGWSFPETA KQDGFSSRMN MSMVKTEASS AMQSFNSENN  180
NHNSAGIQSD YSSYQPQVQT LSRRSDDGYN WRKYGQKQVK GSENPRSYYK CTYPSCPTKK  240
KVERSLDGQI TEIVYKGSHN HPKPQANKRN SLSASSLAIN SVNNEITQAT HHMDSVATPE  300
NSSISMEDDD FGQSKSGGDE FDNDEPDAKR WRLEGENEGI SAVGSRTVRE PRVVVQTTSD  360
IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TFTGCPVRKH VERASHDLRA VITTYEGKHN  420
HDVPAARGSG SNSISRAVPI NATTNSTTSA ATSIYSNNSH QNLRPPAPER TQHYNPNMQQ  480
GSGSFGFSGF GNPLMGSYMN QHSDNVFASR AKEEPGDDSF LDSLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36198425878Probable WRKY transcription factor 4
2lex_A3e-36198425878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0158s00480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014489595.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-140WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1S3T7550.0A0A1S3T755_VIGRR; WRKY transcription factor WRKY24
STRINGXP_007146842.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-105WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]