PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0158s00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 22435.9 Da PI: 9.643 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.3 | 8.2e-18 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s+r++t+ kR++g++KK +E+S+LC++e++ ii+s++ Vradi0158s00100.1 11 ITNDSKRKTTLKKRKHGLIKKMNEISTLCGIEACAIIYSPN 51 89*************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.68 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.01E-22 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-23 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-16 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MARKKLDLTY ITNDSKRKTT LKKRKHGLIK KMNEISTLCG IEACAIIYSP NDPQPEVWPS 60 EPEVQRVLSK FMEMSEQKQC RKMLNQESLL KQIIIKGQQQ LTRQRNDNRK KEMTHLMFQY 120 LNVGRVFDNP SLIDLNDLSW LIDQNLNEIK KKMTMIQIQE GEPVTENGGE RGHMHHVQGL 180 ENRIDTIQNQ Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKLDLTYITNDSKRKTTLKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0158s00100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027915256.1 | 1e-121 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 6e-43 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A3Q0EMI1 | 1e-115 | A0A3Q0EMI1_VIGRR; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_007146871.1 | 1e-114 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 7e-40 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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