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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vradi0149s00170.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
TCP |
| Protein Properties |
Length: 289aa MW: 32087 Da PI: 10.5443 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi0149s00170.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 100.2 | 3.8e-31 | 134 | 220 | 2 | 70 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssa 70
+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ t ++ sa
Vradi0149s00170.1 134 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTVTWNNEATtgghvsrmgfflnsqpfiGQGSA 220
79*****************************************************97766555545666666655544444422222 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MHAACLTMGL NEHSGRIVTI QSLWAAAADE GLQATIVKGN SKQSKYHPPS PIQSPHDSQQ 60
QNLISTHRAH YQVSQNQPPY VEGIGRSSHG IEPSTLDQAI KHRKHNREGT FTRVMRSSVG 120
DIVQVEGGHI VRSTGRKDRH SKVYTSKGPR DRRVRLSAHT AIEFYDVQDR LGYDRPSKAV 180
DWLIKKAKTV TWNNEATTGG HVSRMGFFLN SQPFIGQGSA SAYAQSETLQ SSFSFPMTSS 240
EHQRPQPVHQ PSLFGTRFAV SDGLAGFCIP DRIQGVFSTR FWNRVKII*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
