PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0146s00200.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 587aa    MW: 65167.5 Da    PI: 6.01
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0146s00200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.71.8e-1332275851374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv+lLl+cAeav++++  la+++L +l+  ++p gd+mqR+aa+ft  L+arl+     + +  p+++ s++ns e+l+++++ ++++P++k
  Vradi0146s00200.1 227 LVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNA----TLSPKPSKSLSPSNSMEVLKIYQIVYQACPYVK 314
                        68****************************************************9....777778888888999****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        f+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp  +p lRiTgvg+    s ++++etg+ L+++A++l++pfef++ v +
  Vradi0146s00200.1 315 FAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPTTAPFLRITGVGP----SIDAVRETGRCLTELAHSLRIPFEFHA-VGE 401
                        *********************************************************....9**************************.7** PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        +ledl++++L+ + gEalaVn v +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p
  Vradi0146s00200.1 402 QLEDLKPHMLHRRVGEALAVNAVNRLHRVP------GNHLGNLLTMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFP 487
                        *****************************9......444557************************************************** PP

               GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                        ++s +r+kvE+ ++++ei+n+v+ceg er+erhe+lekWr+ +e  GFk+v+ls +a++q k ll  ++ +gyr+ e++g+l+lgW+dr++v
  Vradi0146s00200.1 488 ADSAQRAKVEQYIFAPEIRNIVSCEGPERFERHERLEKWRKIMEGKGFKSVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIV 579
                        ******************************************************************************************** PP

               GRAS 369 svSaWr 374
                        ++SaWr
  Vradi0146s00200.1 580 AASAWR 585
                        *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.89201565IPR005202Transcription factor GRAS
PfamPF035146.1E-131227585IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MINSLCGTLK SENNSRTKLQ PTSSNDSKKN ATQSSGDLDQ TGLTPPSLNL PALKFDLDGD  60
VEVQSPDNSL WESFFADQLD ADFMISSPVR NLPSPQLSSY NCSYNYAHGM QTQSLSGCSP  120
PKFSSSFNSS HKGKGLSPLH RVFNSPNNQY MQHVENLSLP AIEEFLEDYQ GYSSTKVSSD  180
IATSSECFDL STQIPSSLLD TLTLPDSSRY HGSVDEESSE QDSGLQLVHL LLACAEAVAK  240
EEYMLARRYL HHLNRVVTPL GDSMQRVAAC FTDSLSARLN ATLSPKPSKS LSPSNSMEVL  300
KIYQIVYQAC PYVKFAHFTA NQAIFEAFET EERVHVIDLD ILQGYQWPAF MQALAARPTT  360
APFLRITGVG PSIDAVRETG RCLTELAHSL RIPFEFHAVG EQLEDLKPHM LHRRVGEALA  420
VNAVNRLHRV PGNHLGNLLT MIRDQAPNIV TLVEQEASHN GPYFLGRFLE ALHYYSAIFD  480
SLDATFPADS AQRAKVEQYI FAPEIRNIVS CEGPERFERH ERLEKWRKIM EGKGFKSVAL  540
SPNAVTQSKI LLGLYSCEGY RLTEDKGCLL LGWQDRAIVA ASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-9623458426378Protein SCARECROW
5b3h_A1e-9623458425377Protein SCARECROW
5b3h_D1e-9623458425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0146s00200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027914631.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A4D6M7820.0A0A4D6M782_VIGUN; DELLA protein
STRINGAES783130.0(Medicago truncatula)
STRINGAES783160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-99RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]