PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0134s00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 984aa    MW: 111184 Da    PI: 5.0751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0134s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-07331425147
                        TSSS-HHHHHHHHHHHHHTTTT................................................-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg................................................tWktIartmgkgRtlkqcksrw 44 
                        r++W++ E e l++++kq   +                                                +W++Ia++   gRt+ +c srw
  Vradi0134s00060.1 331 RKKWSKVERENLLKGIKQQFQEmvlefslsidrtsseellreaddmdniiasvkdlevtperirkflpkvNWDLIASMYVGGRTGAECESRW 422
                        7899999999999999999888999999999999999999999999999999999999999999999999*******9999*********** PP

                        HHH CS
    Myb_DNA-binding  45 qky 47 
                        ++y
  Vradi0134s00060.1 423 LNY 425
                        **9 PP
2Myb_DNA-binding31.73.5e-10433477246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g+WT+eEd+ l+  v+  G ++W  Ia+ +g+ Rt+ qc sr+q 
  Vradi0134s00060.1 433 GAWTKEEDKSLLLIVQDTGIRNWFEIAASLGTSRTPFQCLSRFQR 477
                        79*****************************************96 PP
3Myb_DNA-binding409.2e-13487529346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         WT+eEd +l+ av+ +G g+W  +a+ +  +Rt+ qc +rw k
  Vradi0134s00060.1 487 EWTEEEDAQLYSAVTYFGDGNWQYVASVLE-RRTGTQCSNRWKK 529
                        7*****************************.***********98 PP
4Myb_DNA-binding41.62.8e-13536579146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++T+eEd +l  av ++G + W+ Ia++++ gR   qc++r+++
  Vradi0134s00060.1 536 KGSFTQEEDIRLTVAVMLFGRK-WNQIAKYVP-GRIQSQCRDRYLN 579
                        799*****************99.*********.***********98 PP
5Myb_DNA-binding48.91.5e-15589630346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         WT+eEd++l  a++++G   W++Ia++++  Rt+ qc+ rw  
  Vradi0134s00060.1 589 GWTEEEDLRLEAAIAKHGYC-WSKIAEEVP-PRTDSQCRKRWKV 630
                        5*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.411326426IPR017877Myb-like domain
SMARTSM007177.0E-6330428IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12333349IPR009057Homeodomain-like
CDDcd001670.00146389425No hitNo description
Gene3DG3DSA:1.10.10.601.4E-12399438IPR009057Homeodomain-like
SuperFamilySSF466893.56E-17408476IPR009057Homeodomain-like
PROSITE profilePS500909.767427479IPR017877Myb-like domain
SMARTSM007176.0E-9431481IPR001005SANT/Myb domain
CDDcd001678.70E-7434479No hitNo description
PfamPF139211.7E-14435496No hitNo description
Gene3DG3DSA:1.10.10.602.6E-13439490IPR009057Homeodomain-like
PROSITE profilePS5129416.715480535IPR017930Myb domain
SuperFamilySSF466893.52E-23483577IPR009057Homeodomain-like
SMARTSM007175.4E-7484533IPR001005SANT/Myb domain
CDDcd001673.98E-9487531No hitNo description
Gene3DG3DSA:1.10.10.606.2E-17491542IPR009057Homeodomain-like
SMARTSM007179.0E-13535583IPR001005SANT/Myb domain
PROSITE profilePS5129410.172536581IPR017930Myb domain
PfamPF002493.0E-12536579IPR001005SANT/Myb domain
CDDcd001671.06E-7538581No hitNo description
Gene3DG3DSA:1.10.10.602.7E-18543586IPR009057Homeodomain-like
SuperFamilySSF466895.05E-23561633IPR009057Homeodomain-like
PROSITE profilePS5129424.1582636IPR017930Myb domain
SMARTSM007179.6E-14586634IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-17587632IPR009057Homeodomain-like
PfamPF002492.8E-14589630IPR001005SANT/Myb domain
CDDcd001673.75E-13590631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 984 aa     Download sequence    Send to blast
MTPRVDDFGN LSSTDDDDDD DGFKEDMAAL SRACRIVVPG AKDNSAAEDG VPSEDPPIDA  60
STATVSVATD SDSDGQDDLE CLKRVQSLYQ PLSVLPPLAP LALSDDDDDL DDLETVRAIM  120
RRFGDYNEGL REDGKKVLVE EDQTSSMGCE GDVANGSTHN ESDGGELYPI SQDPNEVATE  180
ELIENIEMQL SEFVESSEAD AGESSRLPQK RLSFPPVVQC FIDAIKKNRD LQRFLRGKLI  240
ELEAKIEENK KIRNRVKVLK DFQASCNRRT GNVLSLKKDP RVQLISAKKS SVPKKSKKQK  300
RVPAMCYGPE ENSRAANYRM VLERFPLSLD RKKWSKVERE NLLKGIKQQF QEMVLEFSLS  360
IDRTSSEELL READDMDNII ASVKDLEVTP ERIRKFLPKV NWDLIASMYV GGRTGAECES  420
RWLNYEDPLI NQGAWTKEED KSLLLIVQDT GIRNWFEIAA SLGTSRTPFQ CLSRFQRSLN  480
PSMLNSEWTE EEDAQLYSAV TYFGDGNWQY VASVLERRTG TQCSNRWKKS LCPEKKGSFT  540
QEEDIRLTVA VMLFGRKWNQ IAKYVPGRIQ SQCRDRYLNS LDPSLKWGGW TEEEDLRLEA  600
AIAKHGYCWS KIAEEVPPRT DSQCRKRWKV LCPEQVPLLQ EARKKQRSII SCNFVDRESE  660
RPTITIDDFM PLIALAPKSD IGDSKLPKKR KSSNVSKKTS SKKRAKRTRR CAKEVRDTEV  720
YNDDELYEES ACSNLPKKNT NSKRHTKRSK NCPQELVDIS CSDKVETCIE GSENQSTCIA  780
NSENQDWDGM TLSSFIRNKS NEMLSRFTKK LSQISFSSRI TDVPEQVESQ NPSDDQSGSS  840
ESCDTVGTIN LFVPPNIASD GRVRNQEDTN ALTGDDNDDH MTLASFLGNK PKKKCEPKGH  900
HVCSSKLDTG SALRNEEHCA SMPTIISDDS GSMSYHVDAM ETVLRACVDK PMDTIVEEKD  960
DELFTSHVQN RPRRERKRPS RFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-284016287155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-284016287155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1684690KLPKKRK
2970975RPRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0134s00060.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490974.10.0uncharacterized protein LOC106753648
TrEMBLA0A1S3TB330.0A0A1S3TB33_VIGRR; uncharacterized protein LOC106753648
STRINGXP_007153075.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-167myb domain protein 4r1