PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0100s00250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 358aa    MW: 38709.1 Da    PI: 9.0325
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0100s00250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.53e-09183204223
                        --SS-EEEEEEE--TT-SS-EE CS
               WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                        dDgynWrKYGqK++k   f r+
  Vradi0100s00250.1 183 DDGYNWRKYGQKQIKTLLFGRG 204
                        8**************8777775 PP
2WRKY107.47.3e-34244302159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Vradi0100s00250.1 244 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCKVRKHVERASTDPKAVITTYEGKHNHD 302
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-8168208IPR003657WRKY domain
SuperFamilySSF1182901.12E-6180208IPR003657WRKY domain
SMARTSM007740.0082182237IPR003657WRKY domain
PROSITE profilePS5081110.877183237IPR003657WRKY domain
PfamPF031067.3E-6183206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37229304IPR003657WRKY domain
SuperFamilySSF1182906.8E-30236304IPR003657WRKY domain
PROSITE profilePS5081138.675239304IPR003657WRKY domain
SMARTSM007742.9E-39244303IPR003657WRKY domain
PfamPF031062.0E-26245302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAGGESGDRP PWKESAPPRP TISLPPRAAS METLFNGGFS PGPMTLLSGF LTDGDDSSKS  60
FSQLLAGAMA SPVASTALHD SHGLFSPSQM SFGMTHQQAL AQVSVQASQA NSNMHIQAEH  120
SLPVSVSSPT SFTQVPAATS NATQQLIPPL TADSWATMTE STDHSHSEQK LQSSSLNVDK  180
PADDGYNWRK YGQKQIKTLL FGRGKILCVG ESKTEATNLD PASSHRTVTE PRIIVQTTSE  240
VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TTPGCKVRKH VERASTDPKA VITTYEGKHN  300
HDVPAAKTSS HVMASNNTSQ IKSQNSNHGK QNFGSRDIGG NEQQQVARLR LKEEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-45235305878Probable WRKY transcription factor 4
2lex_A3e-45235305878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0100s00250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-164AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492862.11e-140probable WRKY transcription factor 4
TrEMBLA0A1S3TGI51e-138A0A1S3TGI5_VIGRR; probable WRKY transcription factor 4
STRINGXP_007157702.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4065722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-66WRKY DNA-binding protein 3