PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0095s00070.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SRS
Protein Properties Length: 434aa    MW: 46797.9 Da    PI: 7.6093
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0095s00070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702172.52e-532533983139
             DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls.. 92 
                        sg+++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq ++a+a+  +  s +++a+k+++    ++++++s+t++s  
  Vradi0095s00070.1 253 SGASTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAATAAVGS--SGSTSATKKPKLV-PSQTTTTSHTSTSnn 341
                        7889**********************************************87777765544..4466777777765.444444444444400 PP

             DUF702  93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsig 139
                        +++++++++t s          lP +v+++a f+cvrv++vddg++e+aYq++v+i 
  Vradi0095s00070.1 342 TTTPPRSFDTGSshqdvsfkesLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKID 398
                        55667788877789999**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.9E-48255398IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.3E-27257299IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.2E-16364397IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MLILSPSVTL AETPPSTNAP HIIDFPSTTL RRSNNLFLSL SIKETTFICG YSYKEVTPFE  60
QTSSVVATTR RFPSDSGAFV DWSATPSAVS GRGDDLSLGF NATSAAAQGG ASMWPGASRS  120
FNHNLSPHHD IFVVAPASSF HHHHHSDAVL SDPNNNSSNA TALGVNVFPL LTATPCLTPE  180
SEGIMGNINN HRNRIQLWQP QESPQHQHAD GVLAGNHRSR IQLWQEHDES PPPQQQQQQH  240
PNAHVHEREG SGSGASTCQD CGNQAKKDCS HRRCRTCCKS RGFDCATHVK STWVPAARRR  300
ERQLMAATAA VGSSGSTSAT KKPKLVPSQT TTTSHTSTSN NTTTPPRSFD TGSSHQDVSF  360
KESLPCQVRA PAEFKCVRVT AVDDGDDEYA YQAVVKIDHL ANAQPFISSI IIGCELTVPC  420
RVPFSLLPSS TKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0095s00070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490288.20.0protein LATERAL ROOT PRIMORDIUM 1, partial
TrEMBLA0A1S3T9450.0A0A1S3T945_VIGRR; protein LATERAL ROOT PRIMORDIUM 1
STRINGXP_007146319.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-48Lateral root primordium (LRP) protein-related