PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0086s00450.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 379aa    MW: 41526.6 Da    PI: 6.1158
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0086s00450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.53.9e-151682022156
            G2-like  21 LGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        L G +kA+P++ile+m++++Lt+++++SHLQkYR++
  Vradi0086s00450.1 168 L-GVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 202
                        6.9*******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015575.1E-15167202IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.1E-13167205IPR009057Homeodomain-like
SuperFamilySSF466891.22E-7167205IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLAVSPLRST RDEEQGEMES FSIGTDDFAD LSEGNLLESI NFDDLFMGIN DDEDVLPDLE  60
MDSEMLAEFS LSEESEIVSS VSVVNNKSDD RNENNMVSTE KQDEVIAANF SSDSGSNSGS  120
SRGEEIASKS EESIHSVVVN PSPKESEKGR KSSTHSRNNP QGKRKVKLGV DKAVPSRILE  180
IMGIDCLTRH NIASHLQKYR SHRKHLLARE AEAARLSQRK QFMGAASVGR GGGGKRDVNP  240
WLPPTMGFPP MTPMHHFRPF HVWGHHTMDQ SFMHMWPKHL PYSPSAPAWP PRTAPSPPPP  300
DPLYWHQHQR APNAPTPGTP CFPPPLASTS KESIDAAISD VLSKPWLPLP LGLKGPAVDG  360
VMGELQRQGI PKIPPSCA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0086s00450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491654.10.0transcription activator GLK1
TrEMBLA0A1S3TD140.0A0A1S3TD14_VIGRR; transcription activator GLK1
STRINGXP_007149809.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-33GBF's pro-rich region-interacting factor 1