PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s01090.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 355aa    MW: 39160.6 Da    PI: 5.0117
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s01090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.14.6e-34232286155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+rWtpeLHe+Fveav+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+
  Vradi0083s01090.1 232 KTRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVDGLTIYHVKSHLQKYRT 286
                        68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.504229289IPR017930Myb domain
SuperFamilySSF466894.48E-18230286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-32230288IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-25232286IPR006447Myb domain, plants
PfamPF002496.1E-10234285IPR001005SANT/Myb domain
PfamPF143792.4E-9319339IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MATHDKTNPN GLKSDGPEPP CPHTFTWDSK AMSSSSRVLP TPLENKYMKP PDSCHLSPAS  60
DLAANSVSSN SITSAGKIIS SPSEYPDGTP FSFASQNDRQ NEDLPFVSQT LGDNVSSEIH  120
STTFISHPHE STDITWGPDP FQDILGFPEN ISAQHDQVVD NACYINDENV KRTDFGEWVD  180
QLMSIDDSLH PNWSQLLGDD NAAEPKPKVP QLLEIPSGEV NGNSAATTPQ TKTRMRWTPE  240
LHEAFVEAVN QLGGSEKATP KGVLNLMKVD GLTIYHVKSH LQKYRTARYK PEPSEGTSEK  300
KTTPIEEMKS LDLKTSKGIT EALRLQMDLQ KRLHEQLEVV NLSVVFGCSY FLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-32232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-32232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-32232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-32232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-32232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-32232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-32232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-32232290260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0083s01090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491427.10.0protein PHR1-LIKE 1
TrEMBLA0A1S3TCD60.0A0A1S3TCD6_VIGRR; protein PHR1-LIKE 1
STRINGXP_007147208.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.22e-77G2-like family protein